PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G222000.1

Common Name

B456_007G222000, LOC105804011

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 233aa MW: 25518.1 Da PI: 8.5802

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G222000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.2	9.9e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++ Gorai.007G222000.1 2 SCNGCRVLRKGCSESCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWNGNWH 92 6**************************************************************************************** PP DUF260 87 leqlkaelall 97 ++q+++e++l+ Gorai.007G222000.1 93 VCQAAVETVLR 103 ***999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.882	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.2E-27	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWNGN WHVCQAAVET VLRGGSLRSM PELMAPTPAS 120 DEASEATCTD MWKLRETSTN LNSNCRFSNS RSRVSPKRKR VEEEFKKLQP SDLDLGLTPS 180 FTGKRVTDNR RPGTPSMNSE ESVTTTCFES VFADQQGQGS RGTDKKLLKL FV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	229	DKKLLKL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX584284	4e-66	JX584284.1 Gossypium hirsutum clone NBRI_GE17552 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012491941.1	1e-171	PREDICTED: LOB domain-containing protein 38-like
Swissprot	Q9SN23	5e-91	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A0D2SPK7	1e-170	A0A0D2SPK7_GOSRA; Uncharacterized protein
STRING	Gorai.007G222000.1	1e-171	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	3e-86	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	Gorai.007G222000.1
Entrez Gene	105804011

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]