PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G229700.1

Common Name

B456_007G229700, LOC105804099

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 172aa MW: 19449.1 Da PI: 8.6243

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G229700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	50.2	4.4e-16	61	114	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ F +++ e++ +L ++lgL+ rqV +WFqNr a++k Gorai.007G229700.1 61 KKRRLSMHQVKALEKNFDVGNKLEPERKVKLVEELGLQPRQVAIWFQNRCARWK 114 56689************************************************9 PP
2	HD-ZIP_I/II	104.8	7.1e-34	60	131	1	72
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkrayda 72 ekkrrls +qvk+LE++F+ +kLeperKv+l +eLglqprqva+WFqnr AR+ktk lEkdy++Lk++ ++ Gorai.007G229700.1 60 EKKRRLSMHQVKALEKNFDVGNKLEPERKVKLVEELGLQPRQVAIWFQNRCARWKTKVLEKDYAMLKANREK 131 69*****************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.34E-16	48	116	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.37	56	116	IPR001356	Homeobox domain
SMART	SM00389	5.9E-14	59	120	IPR001356	Homeobox domain
CDD	cd00086	9.56E-13	61	116	No hit	No description
Pfam	PF00046	2.4E-13	61	114	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.8E-17	63	123	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	91	114	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MKRLSPSPSL DAFMSTSQPK VDYAEEKSSK KHQIYSKEFQ AMLDGLDAED SLEEGGQATE 60 KKRRLSMHQV KALEKNFDVG NKLEPERKVK LVEELGLQPR QVAIWFQNRC ARWKTKVLEK 120 DYAMLKANRE KEPPRNCSNC LHSPSDNRQL SGDDCPLVPP KSSPEMTVNG S*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269\|PubMed:14623244}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243121	1e-177	AC243121.1 Gossypium raimondii clone GR__Ba0142D21-hnv, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492050.1	1e-125	PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1
Swissprot	Q940J1	2e-36	ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBL	A0A0D2SLR7	1e-124	A0A0D2SLR7_GOSRA; Uncharacterized protein
STRING	Gorai.007G229700.1	1e-124	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM545	28	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	9e-39	homeobox protein 16

Link Out ? help Back to Top
Phytozome	Gorai.007G229700.1
Entrez Gene	105804099

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]