PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G229700.2
Common NameB456_007G229700, LOC105804099
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 168aa    MW: 19000.6 Da    PI: 8.9398
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G229700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.24.2e-1657110356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k+++++ +q+++Le+ F   +++  e++ +L ++lgL+ rqV +WFqNr a++k
  Gorai.007G229700.2  57 KKRRLSMHQVKALEKNFDVGNKLEPERKVKLVEELGLQPRQVAIWFQNRCARWK 110
                         56689************************************************9 PP
2HD-ZIP_I/II104.86.7e-3456127172
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkrayda 72 
                         ekkrrls +qvk+LE++F+  +kLeperKv+l +eLglqprqva+WFqnr AR+ktk lEkdy++Lk++ ++
  Gorai.007G229700.2  56 EKKRRLSMHQVKALEKNFDVGNKLEPERKVKLVEELGLQPRQVAIWFQNRCARWKTKVLEKDYAMLKANREK 127
                         69*****************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.08E-1643112IPR009057Homeodomain-like
PROSITE profilePS5007115.3752112IPR001356Homeobox domain
SMARTSM003895.9E-1455116IPR001356Homeobox domain
CDDcd000861.56E-1257112No hitNo description
PfamPF000462.2E-1357110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.3E-1759119IPR009057Homeodomain-like
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKRLSPSPSL DAFMSTSQPK EEKSSKKHQI YSKEFQAMLD GLDAEDSLEE GGQATEKKRR  60
LSMHQVKALE KNFDVGNKLE PERKVKLVEE LGLQPRQVAI WFQNRCARWK TKVLEKDYAM  120
LKANREKEPP RNCSNCLHSP SDNRQLSGDD CPLVPPKSSP EMTVNGS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431211e-170AC243121.1 Gossypium raimondii clone GR__Ba0142D21-hnv, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492051.11e-121PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X2
SwissprotQ940J16e-37ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A0D2TGQ41e-120A0A0D2TGQ4_GOSRA; Uncharacterized protein
STRINGGorai.007G229700.11e-118(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-39homeobox protein 16
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]