PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G241000.1
Common NameB456_007G241000, LOC105804246
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family EIL
Protein Properties Length: 483aa    MW: 55568.5 Da    PI: 5.1041
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G241000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3377.61.9e-115363251320
                         XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsL 91 
                         eelkkrmwkd+++l++++er+ +     e+    k s+  +e++rrkkmsraQD+iLkYM+k+me+c+ +GfvYgi+ ekgkp +g+sdsL
  Gorai.007G241000.1  36 EELKKRMWKDRIRLQKMQERRMN----DEP---DKLSEAKEEASRRKKMSRAQDAILKYMMKIMEICKGKGFVYGIVTEKGKPITGSSDSL 119
                         8**************66666665....333...23345569************************************************** PP

                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHH CS
                EIN3  92 raWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwg 182
                         r+WWkekv+fd+++p ai++  +  +i ++ s+l  ++ s  h l+elqDTtlgSLLsalmqhc ppqrrfple+g +pPWWPtG+elwwg
  Gorai.007G241000.1 120 RKWWKEKVHFDKDAPLAIAEFLP--AIIEQ-SEL--DPISCMHLLHELQDTTLGSLLSALMQHCVPPQRRFPLERGQAPPWWPTGNELWWG 205
                         *******************9843..45553.444..5899*************************************************** PP

                         HHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXXXX CS
                EIN3 183 elglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkqspk 273
                         e+g+s++ g+ppy+kphdlkkawkvsvL+avikhmsp++++ir+l+rqsk+lq+km+a+e++++++v+n+ee++ + +          ++ 
  Gorai.007G241000.1 206 EQGVSQQYGPPPYRKPHDLKKAWKVSVLAAVIKHMSPNLDKIRRLVRQSKCLQHKMTAHETATWSKVVNNEEALSK-L---------TDKC 286
                         ************************************************************************8653.2.........2233 PP

                         XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                EIN3 274 vtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakv 320
                         +++s +++ d+e+++ ++  +  a++       + kr + ++e++k+
  Gorai.007G241000.1 287 LKISPSKD-DREEDDSQH--SPPADN-----RRHGKRIASSGEKRKC 325
                         33333322.222111111..111111.....1222222223333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048737.0E-11436277No hitNo description
Gene3DG3DSA:1.10.3180.105.2E-68154281IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.22E-59156279IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MVKFFGESDS PSPGEEINEM EALEDEEEYE EEISYEELKK RMWKDRIRLQ KMQERRMNDE  60
PDKLSEAKEE ASRRKKMSRA QDAILKYMMK IMEICKGKGF VYGIVTEKGK PITGSSDSLR  120
KWWKEKVHFD KDAPLAIAEF LPAIIEQSEL DPISCMHLLH ELQDTTLGSL LSALMQHCVP  180
PQRRFPLERG QAPPWWPTGN ELWWGEQGVS QQYGPPPYRK PHDLKKAWKV SVLAAVIKHM  240
SPNLDKIRRL VRQSKCLQHK MTAHETATWS KVVNNEEALS KLTDKCLKIS PSKDDREEDD  300
SQHSPPADNR RHGKRIASSG EKRKCAKTFE GYGSEFRLGF LNKSSRTDHE SSTSYDSSEE  360
TNPESDLYDN NLIPYGHYSF SLQTISQTNT KDDAQNLLFG IDRHNMELTK AGEQMNEVAN  420
ADISSLTLQD YLDYLSGTIE YLQLPEELQI QRGDMDLNTF IVLRENMDDD QGVTSIWDMG  480
FE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-591542811128Protein ETHYLENE INSENSITIVE 3
4zds_B2e-591542811128Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492207.10.0PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-131EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A0D2QYE20.0A0A0D2QYE2_GOSRA; Uncharacterized protein
STRINGGorai.007G241000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.11e-122EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]