PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G241400.1

Common Name

B456_007G241400

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 225aa MW: 24932.9 Da PI: 9.4314

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G241400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.6	7.4e-10	125	165	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++N eAAr+sR+RKka++++Le L++ ++L Gorai.007G241400.1 125 KTLRRLAQNQEAARKSRLRKKAYVQQLESSRLRLTELEQEL 165 788*************************8766666655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.8E-8	118	169	No hit	No description
SMART	SM00338	3.5E-8	121	192	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.979	123	167	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.9E-7	125	165	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.69E-7	125	167	No hit	No description
PROSITE pattern	PS00036	0	128	143	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MRELVNLKQQ GSIFSLKSNN FGVFSNTLHY GALNMSIGAT MIVSSGTGCL DTGQFMYQKG 60 ATFGAPLGNG QIENWADSGL ANNSQQTDTS TDVDTDHTKQ LPRVQHGAVM VNTVDQPKSK 120 NGDQKTLRRL AQNQEAARKS RLRKKAYVQQ LESSRLRLTE LEQELERTQQ QGIFIASGLS 180 GDHGHTVAGN AALAFDMEYG RWFDEHQRLK LCNNLIHRMI NYGR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438631.1	1e-112	PREDICTED: transcription factor HBP-1b(c38)-like
TrEMBL	A0A0D2SQI8	1e-166	A0A0D2SQI8_GOSRA; Uncharacterized protein
STRING	Gorai.007G241400.1	1e-167	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	1e-32	bZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G241400.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]