PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G246500.1
Common NameB456_007G246500, LOC105804305
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 223aa    MW: 25550 Da    PI: 9.2595
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G246500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.3e-32144202159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Gorai.007G246500.1 144 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 202
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-33129202IPR003657WRKY domain
SuperFamilySSF1182901.14E-28136203IPR003657WRKY domain
PROSITE profilePS5081129.344139204IPR003657WRKY domain
SMARTSM007749.8E-37144203IPR003657WRKY domain
PfamPF031063.2E-25145201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MQNQGLLEEQ QEMPTPMGFF STFPPNNNIT SCPPLGCHPL KAFNIAAPDH HHALPTETLL  60
SSLSSPKHRE HLASDFGGPR LLSLQRSSAK FWAWGELNEC LGSKKNGVDD HLGVSAMKMK  120
RIKARRKVRE PRFCFKTMSE VDVLDDGYKW RKYGQKVVKN TQHPRSYYRC TQDNCRVKKR  180
VERLAEDPRM VITTYEGRHV HSPSHDLDDS QPTDSQLNNF FW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-27135201874Probable WRKY transcription factor 4
2lex_A6e-27135201874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698430.0KF669843.1 Gossypium hirsutum WRKY transcription factor 116 (WRKY116) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492319.11e-169PREDICTED: probable WRKY transcription factor 13
SwissprotQ9SVB73e-61WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A0D2PEG71e-168A0A0D2PEG7_GOSRA; Uncharacterized protein
STRINGGorai.007G246500.11e-169(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.12e-53WRKY DNA-binding protein 13
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]