PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G253200.1
Common NameB456_007G253200, LOC105804385
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 384aa    MW: 42047 Da    PI: 7.2713
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G253200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding544e-17120165147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l+++v+q+G  +W++Ia+++  gR++k+c++rw++ 
  Gorai.007G253200.1 120 RGHWRPAEDAKLKELVAQYGAQNWNLIAEHLE-GRSGKSCRLRWFNQ 165
                         899*****************************.***********996 PP
2Myb_DNA-binding51.91.7e-16172215146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r +++ eE+e+l+ a++ +G++ W+ I+r ++ gRt++ +k++w+ 
  Gorai.007G253200.1 172 RRAFSDEEEERLLSAHRVYGNK-WAMISRLFP-GRTDNAVKNHWHV 215
                         6789******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.124115166IPR017930Myb domain
SMARTSM007177.5E-15119168IPR001005SANT/Myb domain
PfamPF002492.4E-16120165IPR001005SANT/Myb domain
SuperFamilySSF466898.99E-28120213IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.7E-27121173IPR009057Homeodomain-like
CDDcd001675.51E-14123164No hitNo description
PROSITE profilePS5129425.646167221IPR017930Myb domain
SMARTSM007171.5E-13171219IPR001005SANT/Myb domain
PfamPF002494.8E-13172214IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-19174220IPR009057Homeodomain-like
CDDcd001677.08E-11174214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSLPNLNNDF DCCSGVVKEM NFLAPPPILS PSVERDSTNP QMGFQIPSSL MEQHNKCLSF  60
EPLESRGTMR AAACYGKDGV LGDEKKGLAL NLGVEVDDVS NKNSGAVGGT KIGHTKLCSR  120
GHWRPAEDAK LKELVAQYGA QNWNLIAEHL EGRSGKSCRL RWFNQLDPRI NRRAFSDEEE  180
ERLLSAHRVY GNKWAMISRL FPGRTDNAVK NHWHVIMARK HREQSSFYRR RKPCSSSFAS  240
QAVPKGLDVT FQNNACSDQS TISSNIDESA STCTDLCLTP SPAEVPLGFF SSFSPVLQTG  300
PSRTKENGDF GKLYGSGNVL YQQQGPMGVA NGVDQSTHSS DSEVTAGEPV GTNKTNHSIE  360
SEDGNEKKIH NMRFIDFLGV GAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-351202207107B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, expressed in anther vacuolar tissue from stage 9 to stage 13. {ECO:0000269|PubMed:20305120}.
UniprotTISSUE SPECIFICITY: Expressed in root vascular tissue, primordia of lateral roots, leaf collar, and veins of lemma, palea and pistil. {ECO:0000269|PubMed:20305120}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527280.0KM052728.1 Gossypium hirsutum LOF-like transcription factor LOF4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492437.10.0PREDICTED: myb-like protein Q
SwissprotQ5NBM82e-74CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A0D2QZ010.0A0A0D2QZ01_GOSRA; Uncharacterized protein
STRINGGorai.007G253200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-71myb domain protein 105
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  7. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  8. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  9. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]