PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G268800.2
Common NameB456_007G268800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 177aa    MW: 19974.2 Da    PI: 4.3273
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G268800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.7e-0817402347
                        -HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                         W++Ia +++ gRt++++k++w+ +
  Gorai.007G268800.2 17 KWSLIAGRLP-GRTANDVKNYWNCH 40
                        4*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.513145IPR017930Myb domain
SuperFamilySSF466891.17E-81454IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-131654IPR009057Homeodomain-like
PfamPF002493.4E-61638IPR001005SANT/Myb domain
CDDcd001675.67E-61741No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MKFSSSLSFT SSSETSKWSL IAGRLPGRTA NDVKNYWNCH LSKKLNNAQE TEEEYQNGMK  60
METLKPQPRC IAVTGSIKPR TQDHFAPKNQ PTIQESTMPT PFNFVEVDKQ QGQELVKEEE  120
DIREEAAGGV FFGDLATEDH QFGQLDEVNV LSSTEGCSKW DWDDLMLDMD LWTDSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4916540.0JX491654.1 Gossypium hirsutum MYB transcription factor (MYB113) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492675.11e-117PREDICTED: transcription factor MYB113-like
TrEMBLA0A0D2SRR21e-129A0A0D2SRR2_GOSRA; Uncharacterized protein
STRINGGorai.007G268800.11e-117(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.19e-13myb domain protein 113
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]