PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G271900.1
Common NameB456_007G271900, LOC105804579
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 216aa    MW: 23998.7 Da    PI: 5.4158
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G271900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83e-193383155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        ++y+GVr++  +g+WvAeIr+p   + r  r +lg+f t +eAa a++aa++kl+g
  Gorai.007G271900.1 33 CRYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFNTSFEAALAYDAAARKLYG 83
                        78*****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-143383IPR001471AP2/ERF domain
CDDcd000187.06E-203391No hitNo description
SuperFamilySSF541711.31E-203492IPR016177DNA-binding domain
SMARTSM003806.1E-353497IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-303492IPR001471AP2/ERF domain
PROSITE profilePS5103222.0363491IPR001471AP2/ERF domain
PRINTSPR003671.1E-93546IPR001471AP2/ERF domain
PRINTSPR003671.1E-95773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEAQGKTNGE RPSMGKSRKG CMRGKGGPEN AMCRYRGVRQ RTWGKWVAEI REPNRGSRLW  60
LGTFNTSFEA ALAYDAAARK LYGSSAKLNL PQPHDDHQTP CFTSLPGNFV ASCKETGITM  120
RQPLGNGLCV VESPPGSSVS SSQSSEERLV RREINTNEFK GSSLGDDGEE VFNWPEFSLE  180
NDFLEMSDID VLMGQEFRDN WNGNEIAGIQ NQWFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-173591360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492706.11e-160PREDICTED: dehydration-responsive element-binding protein 2D-like
RefseqXP_016755441.11e-160PREDICTED: dehydration-responsive element-binding protein 2D-like
TrEMBLA0A0D2SKM11e-159A0A0D2SKM1_GOSRA; Uncharacterized protein
TrEMBLA0A1U8PWD71e-159A0A1U8PWD7_GOSHI; dehydration-responsive element-binding protein 2D-like
TrEMBLA0A2P5Q8211e-159A0A2P5Q821_GOSBA; Uncharacterized protein
STRINGGorai.007G271900.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2243945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.12e-37ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]