PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G274100.1

Common Name

B456_007G274100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 125aa MW: 14173.1 Da PI: 8.4955

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G274100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	84	1.7e-26	26	80	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 v+YkeC++NhA +lG ++vDGCgEf p+ +g++ + C ACgCHRnFHR+ev+++ Gorai.007G274100.1 26 DVKYKECKRNHAPQLGINVVDGCGEFAPK---TGHVMDFDCEACGCHRNFHRKEVTKQ 80 689***********************9...67899***************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.5E-21	27	77	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-13	27	87	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.3E-23	28	77	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	19.985	29	76	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MASNFFEQKP FKPPFEIIAR RTKTLDVKYK ECKRNHAPQL GINVVDGCGE FAPKTGHVMD 60 FDCEACGCHR NFHRKEVTKQ VSITFIDNEG ANLYRFQPRS PQLNNEQEAV ENGELDGGMK 120 KPKK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022719697.1	6e-46	mini zinc finger protein 1-like
TrEMBL	A0A0D2R074	6e-88	A0A0D2R074_GOSRA; Uncharacterized protein
STRING	Gorai.007G274100.1	1e-88	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22155	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	1e-17	homeobox protein 31

Link Out ? help Back to Top
Phytozome	Gorai.007G274100.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]