PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G277200.1
Common NameB456_007G277200, LOC105804644
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 324aa    MW: 33897.4 Da    PI: 6.0913
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G277200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.6e-10173217554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h+++Er RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  Gorai.007G277200.1 173 HSIAERLRRERIAERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 217
                         99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-16166228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.526168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-16170230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.77E-11172222No hitNo description
PfamPF000101.2E-7173217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-12174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAGNQQQEAG LGDDFFEQIL AVPPGYGGGA TLPMGLQLGS SGGATGASGG DSGGGGFRGI  60
GMMPLGLNLE HGFLRHEDGV VVDNNNNNAS CSAASAVSGI SERDSMHMVS LFPPFGQMQT  120
QQIRASPPPP QPPPQLHQPF HSQPTSGPVA AAPHPPAVRP RVRARRGQAT DPHSIAERLR  180
RERIAERMKA LQELVPSCNK TDRAAMLDEI VDYVKFLRLQ VKVLSMSRLG AAGAVAQLVA  240
DVPLLSVEGD GAGGGTQPAW EKWSNDGTEQ QVAKLMEEDI GAAMQFLQSK ALCIVPISLA  300
SAIFPAHQPD APTIVKPESN TPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177182RLRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5251961e-100HQ525196.1 Gossypium herbaceum clone NBRI_D2_1401 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492792.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227682e-84UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0D2SS580.0A0A0D2SS58_GOSRA; Uncharacterized protein
STRINGGorai.007G277200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]