PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G285700.1

Common Name

B456_007G285700, LOC105804724

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GeBP

Protein Properties

Length: 423aa MW: 46345.1 Da PI: 4.3655

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G285700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	108.7	4e-34	128	231	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk........spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskeh 84 lfqrlw++eDei lLqG++d+++ + + + ++d+ fy+++k++++++++k+qlveK+rrLKkK+++ +k++sgke+sf+++h Gorai.007G285700.1 128 LFQRLWTDEDEIELLQGFLDYTMLKTSsnpsstshHHHQDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVISKISSGKEFSFKSPH 218 79*****************876655455555445678************************************************ PP DUF573 85 dqkifelskkiWg 97 dq +fe+s++iW Gorai.007G285700.1 219 DQATFEISRRIWS 231 **********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.3E-32	129	231	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MASEQYGAVF EVSQDDDDEP SSSDNEINEN DDVLNGNEDV LNDEEDEVLL EEEEDINSPS 60 LLPQPIPSQV SFASVPAVPL AVPSAAAVTI AAISTDELPP DSKSQRVDSV VAEKKTPPPQ 120 QLDDSRRLFQ RLWTDEDEIE LLQGFLDYTM LKTSSNPSST SHHHHQDTAL FYDQIKSKLQ 180 LDFNKNQLVE KLRRLKKKYR NVISKISSGK EFSFKSPHDQ ATFEISRRIW SDGVSKVEDN 240 VLDDDENNNN NNASLIDESG EKKNLTQKPA ATKKRSRNKG VKMEEKIDVN DGIVHIDSNS 300 NDRVNNDNGN VEALGGGSSG GGANTGAAGV IEETVRSCVT PLFKELLGSV LGGGGGYGGR 360 GISGLVMNAI PLCLGGGGGN GEWMDERWRK LQIMELEVYS KRVELVQDEI KAALEELRSM 420 NR*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MASEQYGAVF EVSQDDDDEP SSSDNEINEN DDVLNGNEDV LNDEEDEVLL EEEEDINSPS  60
LLPQPIPSQV SFASVPAVPL AVPSAAAVTI AAISTDELPP DSKSQRVDSV VAEKKTPPPQ  120
QLDDSRRLFQ RLWTDEDEIE LLQGFLDYTM LKTSSNPSST SHHHHQDTAL FYDQIKSKLQ  180
LDFNKNQLVE KLRRLKKKYR NVISKISSGK EFSFKSPHDQ ATFEISRRIW SDGVSKVEDN  240
VLDDDENNNN NNASLIDESG EKKNLTQKPA ATKKRSRNKG VKMEEKIDVN DGIVHIDSNS  300
NDRVNNDNGN VEALGGGSSG GGANTGAAGV IEETVRSCVT PLFKELLGSV LGGGGGYGGR  360
GISGLVMNAI PLCLGGGGGN GEWMDERWRK LQIMELEVYS KRVELVQDEI KAALEELRSM  420
NR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012492883.1	0.0	PREDICTED: uncharacterized protein LOC105804724
TrEMBL	A0A0D2SLF4	0.0	A0A0D2SLF4_GOSRA; Uncharacterized protein
STRING	Gorai.007G285700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	5e-60	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Gorai.007G285700.1
Entrez Gene	105804724

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]