PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G294800.2
Common NameB456_007G294800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 304aa    MW: 33946 Da    PI: 8.622
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G294800.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13113164155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Gorai.007G294800.2 113 QRMTHIAVERNRRRQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 164
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.63E-11111165No hitNo description
Gene3DG3DSA:4.10.280.108.3E-14111168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16112181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-9118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MALEAVVFQQ DLFGYNSKDL YSLLGGNLSY EDIHFPHHNQ KSDEANNNFV NGGDSYWVSS  60
SSSPTSMAPP PPPDEATNNN VNGSSSSALD TSTSRPKRRR LKTRKNKEEI ENQRMTHIAV  120
ERNRRRQMNE YLSVLRSLMP ESYVQRGDQA SIIGGAINFV KELEHCVQLL SAKKETKERP  180
NGSSSGCSSP FGEFFTFPQY STSSTRGDNN SIPMNESMVE TRSAIADIEV TMVESHANLK  240
IRSKKGPAQL LKLVSGLNSM RLNILHLNVT TVDQTVLYSL SVKVSNTIHR YIHTHIYIQF  300
VDL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196100KRRRL
2113124RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012493064.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9SK911e-70BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A0D2SLU10.0A0A0D2SLU1_GOSRA; Uncharacterized protein
STRINGGorai.007G294800.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.14e-70bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]