PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G346200.1

Common Name

B456_007G346200, LOC105761491

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 253aa MW: 27601.1 Da PI: 7.6246

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G346200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.6	1.2e-39	42	143	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkC+++C++ap+f ++q ++kfa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l Gorai.007G346200.1 42 PCGACKFLRRKCVSGCIFAPHFGSDQgAAKFAAVHKVFGASNVSKLLLHIPMNRRHDAVVTISYEAQARLSDPVYGCVSTILSLQQQVASL 132 7*********************9989*********************************************************** PP DUF260 91 kaelallkeel 101 +ael++++++l Gorai.007G346200.1 133 QAELVMVQNQL 143 *****9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.121	41	143	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.9E-39	42	140	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:1900150	Biological Process	regulation of defense response to fungus

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MADPQCHGLS ETCRKGAGKR TTMPVEAKPV VASEVAPIPT APCGACKFLR RKCVSGCIFA 60 PHFGSDQGAA KFAAVHKVFG ASNVSKLLLH IPMNRRHDAV VTISYEAQAR LSDPVYGCVS 120 TILSLQQQVA SLQAELVMVQ NQLINSRFAM ANALQSSQQQ QHHHQHHHQQ QQQQHLALLQ 180 PAYSNNSSAS NNLINISNFA SNFDLVAETT TAPNSSQSMD HLQLSRPCHD DEDDEQDSRI 240 PPVFVNPIIH RT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-37	32	149	1	115	LOB family transfactor Ramosa2.1
5ly0_B	6e-37	32	149	1	115	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012434765.1	0.0	PREDICTED: LOB domain-containing protein 20
Swissprot	Q9SRV3	9e-75	LBD20_ARATH; LOB domain-containing protein 20
TrEMBL	A0A0D2TRJ6	0.0	A0A0D2TRJ6_GOSRA; Uncharacterized protein
STRING	Gorai.007G346200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	1e-63	LOB domain-containing protein 20

Link Out ? help Back to Top
Phytozome	Gorai.007G346200.1
Entrez Gene	105761491

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]