PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G346300.1

Common Name

B456_007G346300, LOC105761492

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 286aa MW: 31694.8 Da PI: 6.6814

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G346300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.6	1.4e-15	56	116	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l ++ +++V++WFqNrR + ++ Gorai.007G346300.1 56 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 116 89***************99***********************************997 PP
2	Wus_type_Homeobox	107.2	1e-34	55	118	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q Gorai.007G346300.1 55 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 118 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.29E-14	49	123	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.434	52	117	IPR001356	Homeobox domain
SMART	SM00389	1.1E-6	54	121	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.6E-9	55	121	IPR009057	Homeodomain-like
Pfam	PF00046	2.9E-13	56	116	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0048830	Biological Process	adventitious root development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MCFGIFLSYI LKPRFQLEGT IFISVHYYFL HFKVMEDQAP DPNGPSHGSE RSEPVRSRWT 60 PKPEQILILE SIFNSGMVNP PKDETVRIRK LLEKFGSVGD ANVFYWFQNR RSRSRRRQRQ 120 QLLAAGAREQ RNNQLQILGN GGGGGAIQYE NNEVSTGFAN SPPNFASFLI GPSSSYGVMN 180 DDGMGNLLSM SSQMGFQGNG ESSNITSILC PSETSNLQYQ SGFITVFING VPTEVPRGPL 240 DIKAMFGEDV MLVHSSGLPL PMNDFGFLLE SLLHGESYFL VSRTS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00330	DAP	Transfer from AT3G03660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012434767.1	0.0	PREDICTED: WUSCHEL-related homeobox 11-like isoform X2
Swissprot	Q6X7J3	6e-77	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A0D2PJ24	0.0	A0A0D2PJ24_GOSRA; Uncharacterized protein
STRING	Gorai.007G346300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2819	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	6e-77	WUSCHEL related homeobox 11

Link Out ? help Back to Top
Phytozome	Gorai.007G346300.1
Entrez Gene	105761492

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]