PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G361700.2

Common Name

B456_007G361700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 247aa MW: 27069.7 Da PI: 5.6504

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G361700.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.2	7.1e-09	136	183	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Gorai.007G361700.2 136 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 183 8*************************9....888999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.44E-9	130	187	No hit	No description
SuperFamily	SSF47459	2.09E-15	130	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-15	132	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.519	132	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-6	136	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-8	138	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MESNAGTLET RSNKTALERE EVAALESLQF TDEIHCLMSA PATDNASSFT ALLELPAPQA 60 VQLIHSPDSA KLIAAPAPNV EDFKGGFHFP SNGGLIERAA RFSVFAGEGN NKKSSDDTEK 120 LPYVHVRARR GQATDSHSLA ERARREKINA RMKLLQELVP GCNKISGTAL VLDEIINHVQ 180 SLQRQVEFLS MRLAAVNPRV DFNFDSVFTA ESGFFMDSNF SGMVMPMMWP EIQLSATCLG 240 ERRSLQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.1917	0.0	flower\|seedling\| flowering

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016669478.1	1e-109	PREDICTED: transcription factor bHLH48-like isoform X4
Swissprot	Q8VZ02	2e-73	BH048_ARATH; Transcription factor bHLH48
TrEMBL	A0A0D2TSB3	0.0	A0A0D2TSB3_GOSRA; Uncharacterized protein
STRING	Gorai.007G361700.1	1e-108	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42300.1	1e-75	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.007G361700.2

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]