PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G363800.1

Common Name

B456_007G363800, LOC105761685

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NF-YA

Protein Properties

Length: 315aa MW: 34178.6 Da PI: 9.8405

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G363800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	96.4	3.2e-30	160	215	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++I++RRq+Rak+ ++kl +k+rkpy+h SRh hA+rRpRg+gGrF Gorai.007G363800.1 160 GPIYVNAKQYKGIMRRRQSRAKAVLQNKL-SKARKPYMHYSRHLHAMRRPRGCGGRF 215 69*************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.3E-34	157	218	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.469	158	218	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.4E-21	161	183	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.9E-26	161	215	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.4E-21	192	215	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MQTLHLKEYG GIGNHPMGQL ASIPPSSLPT LPWCSVLGSH QSLHGGEAFG AQLKPFLMEH 60 PSNGDQVLSS KQLNKGNTAQ FTIFPGDCKN SGDEHNKPQA VTSLQSDPAE NGARFELGFG 120 QHMASAKYPY MDQLYGVFST YGAQISGRVM LPLNMASEEG PIYVNAKQYK GIMRRRQSRA 180 KAVLQNKLSK ARKPYMHYSR HLHAMRRPRG CGGRFLNTRG SGSDKDDTAT KKATQGLISN 240 RSCSSDSGTL NSSKGPTHSG CSEVTSIYSR RDLDHHFLID HLGLSVHSIS SMINNQRGGT 300 ITVATADNCC NLKV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	2e-16	159	216	2	60	HAPB protein
4g92_A	2e-16	159	216	2	60	HAPB protein
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583629	3e-46	JX583629.1 Gossypium hirsutum clone NBRI_GE16721 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435019.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X2
TrEMBL	A0A0D2TSD8	0.0	A0A0D2TSD8_GOSRA; Uncharacterized protein
STRING	Gorai.007G363800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	8e-50	nuclear factor Y, subunit A10

Link Out ? help Back to Top
Phytozome	Gorai.007G363800.1
Entrez Gene	105761685

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]