PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.007G373500.3

Common Name

B456_007G373500

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 448aa MW: 50664.8 Da PI: 6.9124

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.007G373500.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.1	4.8e-09	327	374	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +lvd+++++G g+W+ I + + + Rt+ +++++w+++l Gorai.007G373500.3 327 WTLMEVIKLVDGIAKYGVGRWTNIKKLLFassTYRTPVDLRDKWRNLL 374 **********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.8E-12	319	378	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.824	319	378	IPR017930	Myb domain
SuperFamily	SSF46689	1.12E-15	321	392	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-9	323	376	IPR001005	SANT/Myb domain
CDD	cd11660	1.65E-16	325	375	No hit	No description
Pfam	PF00249	5.7E-7	326	374	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
METDRKSHSM KKLDDVKCQR VDQPVVPGLD DEVTEVEHLL AEPKIEHVSA DGILCFGNEN 60 IEKHLKMEDF SCAFDYGWKI SSGGLDSIHG RGGDDLKLEV LDGLLDEVDE VDDIDAAHDL 120 SGACEDFLLD IEFPEKLSEL DCGPREGSTL CNSSSESHSP GFSGRSNSVS GISESSIATV 180 RESNSENGGL GKRVGCNLRH NFRRKHGCQG PVMDVGRSSI EHVQDLDESD DDEKPLKRLR 240 KPTRRYIEEF SRNSTMEESK SHKIQPQEEF PQVPSESQPR RGCPKKIVLK SELESDYELS 300 ASESEDGRKR TKRSKTACDR RKHQKMWTLM EVIKLVDGIA KYGVGRWTNI KKLLFASSTY 360 RTPVDLRDKW RNLLRSSSVQ ENNRREVENH PKHAVRPLPK PVVRRIRELA TIHPYPKVSS 420 VDYVPSSEQP TTKGTPVYYR ARNLRRK*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

METDRKSHSM KKLDDVKCQR VDQPVVPGLD DEVTEVEHLL AEPKIEHVSA DGILCFGNEN  60
IEKHLKMEDF SCAFDYGWKI SSGGLDSIHG RGGDDLKLEV LDGLLDEVDE VDDIDAAHDL  120
SGACEDFLLD IEFPEKLSEL DCGPREGSTL CNSSSESHSP GFSGRSNSVS GISESSIATV  180
RESNSENGGL GKRVGCNLRH NFRRKHGCQG PVMDVGRSSI EHVQDLDESD DDEKPLKRLR  240
KPTRRYIEEF SRNSTMEESK SHKIQPQEEF PQVPSESQPR RGCPKKIVLK SELESDYELS  300
ASESEDGRKR TKRSKTACDR RKHQKMWTLM EVIKLVDGIA KYGVGRWTNI KKLLFASSTY  360
RTPVDLRDKW RNLLRSSSVQ ENNRREVENH PKHAVRPLPK PVVRRIRELA TIHPYPKVSS  420
VDYVPSSEQP TTKGTPVYYR ARNLRRK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435185.1	0.0	PREDICTED: uncharacterized protein LOC105761804
TrEMBL	A0A0D2TT38	0.0	A0A0D2TT38_GOSRA; Uncharacterized protein
STRING	Gorai.007G373500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	8e-25	TRF-like 6

Link Out ? help Back to Top
Phytozome	Gorai.007G373500.3

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]