PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G375800.1
Common NameB456_007G375800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family E2F/DP
Protein Properties Length: 316aa    MW: 35330.5 Da    PI: 6.3544
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G375800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.74.1e-2361140471
             E2F_TDP   4 ksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          +Lr+++ +   +++k e+ g +t+ eva+e+++e               ++kn rRR+YD+lNVL+a+++i++ ek+eirwkg
  Gorai.007G375800.1  61 GGLRQFSVM---VCKKLESkGSTTYAEVADEIIEEfaatqsntagsldefHEKNVRRRVYDALNVLMAMDIITR-EKKEIRWKG 140
                         589999999...****9999******************************999*********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094047.0E-943313IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.101.0E-3657145IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.6E-2458140IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.09E-1761141IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.6E-2062140IPR003316E2F/DP family, winged-helix DNA-binding domain
SMARTSM011381.0E-41147285IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440743.4E-38147289No hitNo description
CDDcd144582.93E-34147253IPR014889Transcription factor DP, C-terminal
PfamPF087812.1E-32148272IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDDLHLEDST YSEQSPVATP TNASTSESAY RTNRLAVKQK NGDADLVEGT TKKKVSRMPG  60
GGLRQFSVMV CKKLESKGST TYAEVADEII EEFAATQSNT AGSLDEFHEK NVRRRVYDAL  120
NVLMAMDIIT REKKEIRWKG LSTTQTKDLE ELTAAHVQLM TSISRKTAYL KDLEEQIAGL  180
RNIIKRNQRM LKSNNNNNNT APKEGFTLPF ILVQTSPHAT VEIEISEDMQ LVHLDFNSTP  240
FSLHDDAYIL KLMHCYQQPE GRNLSQSSSI HSSSSSCKAS GGVSKPFYWN SEADTVKQVP  300
YLQVSDHQYE EQSGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B8e-2860143991PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Low expression at the G1/S transition and increases during the S phase. S/G2 transitions. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Strongly expressed in the actively dividing tissues of the shoot apical meristem, young leaf primordia, the vascular tissues of the maturing leaf primordia and axillary buds. {ECO:0000269|PubMed:11889041}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269|PubMed:11889041, ECO:0000269|PubMed:11891240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435221.10.0PREDICTED: transcription factor-like protein DPA isoform X1
SwissprotQ9FNY31e-90DPA_ARATH; Transcription factor-like protein DPA
TrEMBLA0A0D2SR900.0A0A0D2SR90_GOSRA; Uncharacterized protein
STRINGGorai.007G375800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116412233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02470.36e-91Transcription factor DP
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]