PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G038800.3
Common NameB456_008G038800
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 245aa    MW: 28166.1 Da    PI: 8.9932
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G038800.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.81.7e-30179552128
                 NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k +e+ewyfF++rd+k+ +g r+nr+t++gyWkatg+d++++s    ++ +glkktLvfykgrap+g+ktdWvm+eyrl
  Gorai.008G038800.3  17 KIGEREWYFFVPRDRKHGNGGRPNRTTENGYWKATGSDRKIVSLsdPKRITGLKKTLVFYKGRAPRGNKTDWVMNEYRL 95 
                         45789************************************997666777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.7451113IPR003441NAC domain
SuperFamilySSF1019412.62E-3614113IPR003441NAC domain
PfamPF023653.1E-152295IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSNSDVVLFF FFLGLSKIGE REWYFFVPRD RKHGNGGRPN RTTENGYWKA TGSDRKIVSL  60
SDPKRITGLK KTLVFYKGRA PRGNKTDWVM NEYRLPDGCS LPKDIVLCKI YRKATSLRVL  120
EQRAALEEEL EATNTTTSSP LSSLETISFR SPKEDLVPSI SETREFFKKE IEEEKEAMVE  180
EKKDIIAKEN KVSPASLQFP VGNEKLAELQ LPKIINDWTQ DQFWTQLNSP WFQNLTPYAN  240
ILNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-311811668168NO APICAL MERISTEM PROTEIN
1ut4_B2e-311811668168NO APICAL MERISTEM PROTEIN
1ut7_A2e-311811668168NO APICAL MERISTEM PROTEIN
1ut7_B2e-311811668168NO APICAL MERISTEM PROTEIN
3swm_A2e-311811671171NAC domain-containing protein 19
3swm_B2e-311811671171NAC domain-containing protein 19
3swm_C2e-311811671171NAC domain-containing protein 19
3swm_D2e-311811671171NAC domain-containing protein 19
3swp_A2e-311811671171NAC domain-containing protein 19
3swp_B2e-311811671171NAC domain-containing protein 19
3swp_C2e-311811671171NAC domain-containing protein 19
3swp_D2e-311811671171NAC domain-containing protein 19
4dul_A2e-311811668168NAC domain-containing protein 19
4dul_B2e-311811668168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9141470.0JQ914147.1 Gossypium hirsutum NAC domain protein 16 (NAC16) mRNA, complete cds.
GenBankKC1106460.0KC110646.1 Gossypium hirsutum NAC protein 11 (NAC11) mRNA, complete cds.
GenBankKJ4515960.0KJ451596.1 Gossypium hirsutum isolate CCRI10-N36 NAC domain protein 78 (NAC78) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436419.11e-169PREDICTED: putative NAC domain-containing protein 94
SwissprotQ10S655e-68NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A0D2R8V81e-179A0A0D2R8V8_GOSRA; Uncharacterized protein
STRINGGorai.008G038800.11e-168(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.13e-75NAC domain containing protein 36
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]