PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G044700.1

Common Name

B456_008G044700

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 233aa MW: 26376.2 Da PI: 8.8179

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G044700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	74.5	1.6e-23	67	115	3	56
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 +rYkeC++NhAas+G +a+DGCgEf+ + + + CaACgCHR+FHR++ Gorai.008G044700.1 67 ICRYKECRRNHAASIGRYAIDGCGEFICC-----KDDVFMCAACGCHRSFHRKD 115 589***********************8.....3478************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.2E-18	68	115	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.1E-19	69	115	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	22.234	70	115	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-11	70	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.3E-21	161	229	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.32E-14	162	229	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.665	166	230	IPR001356	Homeobox domain
TIGRFAMs	TIGR01565	1.9E-20	170	224	IPR006455	Homeodomain, ZF-HD class
CDD	cd00086	0.00839	171	229	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MQFFPFKEQF HLPNHPTNTA LLIINSLSLM EGETRNVVIK VEAESDVEPI SVQRCCSLVS 60 DQSNERICRY KECRRNHAAS IGRYAIDGCG EFICCKDDVF MCAACGCHRS FHRKDYLPPP 120 PQPKLMSSCL APLPLASHNG LTGETSLFVK DRNNTVAGPG AEEQNTNKEA KRTRLTVEQK 180 NKMMRFADKL GWRSQGHDDA EIRQFCEQVG ITKRVFVVWL NNNRRRSRKG SK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-14	172	224	21	73	ZF-HD homeobox family protein
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX588026	1e-146	JX588026.1 Gossypium hirsutum clone NBRI_GE22331 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435639.1	1e-176	PREDICTED: zinc-finger homeodomain protein 6-like
TrEMBL	A0A0D2R974	1e-174	A0A0D2R974_GOSRA; Uncharacterized protein
STRING	Gorai.008G044700.1	1e-175	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18668	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	5e-32	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Gorai.008G044700.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]