PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G044800.1

Common Name

B456_008G044800, LOC105761936

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 172aa MW: 19227.5 Da PI: 4.6237

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G044800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	73	4.5e-23	38	92	4	57
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 +Y eC++N a +G + vDGC fm+ + +e t++al Ca CgCHR+FHR+ + Gorai.008G044800.1 38 ETYMECRRNYLAPIGRYIVDGCEKFMKRSASEdQTKEALFCAGCGCHRSFHRKVM 92 68***********************98888799****************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.1E-21	39	91	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.3E-19	39	90	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	19.054	40	91	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-10	40	90	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MEKSIKTDEI NKAAVAVEVE ANSVQGMDGD GVDEQGGETY MECRRNYLAP IGRYIVDGCE 60 KFMKRSASED QTKEALFCAG CGCHRSFHRK VMPPQPHVQD NTRFHRIMDF LYSLPLTRLE 120 PRPPAPWLMR SLQQQQLANY ELVEGQGSSL SPEEGEEKTD SESGDEVNQA V*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435323.1	1e-127	PREDICTED: zinc-finger homeodomain protein 2-like
TrEMBL	A0A0D2SUL1	1e-126	A0A0D2SUL1_GOSRA; Uncharacterized protein
TrEMBL	A0A2P5QFV9	1e-126	A0A2P5QFV9_GOSBA; Uncharacterized protein
STRING	Gorai.008G044800.1	1e-127	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22076	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74660.1	3e-15	mini zinc finger 1

Link Out ? help Back to Top
Phytozome	Gorai.008G044800.1
Entrez Gene	105761936

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]