PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G053100.6

Common Name

B456_008G053100

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 250aa MW: 27769.2 Da PI: 8.4381

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G053100.6	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	7.9e-11	147	194	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Gorai.008G053100.6 147 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 194 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.24E-18	141	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.36E-10	141	198	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.6E-18	143	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	143	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-8	147	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-10	149	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MDPPAMMSDG RYNLAEIWQY PMSESGISRG QFGHGLAQFG DPSREVSGND PGSLEQQQRR 60 GGMRRRRDGE DETAKVVSTS STSSGNAVND GEGKRIKAAG GREQNHESRV EAEPSSGKLV 120 EEKAQPSEPP KQDYIHVRAR RGQATDSHSL AERARREKIS ERMKILQDLV PGCNKVIGKA 180 LVLDEIINYI QSLQRQVEFL SMKLEAVNSG INPAIEVFPR KDVSTYPVVD NVVLFIHFRP 240 KVILFFSNY*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Isoform 1 is specifically expressed in flowers, mostly in petals, inflorescence and flower buds. Isoform 2 is expressed ubiquitously (leaves, flowers and stems). {ECO:0000269\|PubMed:16902407}.

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269\|PubMed:16902407}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269\|PubMed:16902407}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436655.1	1e-162	PREDICTED: transcription factor BPE-like
Swissprot	Q0JXE7	7e-77	BPE_ARATH; Transcription factor BPE
TrEMBL	A0A0D2PMT2	0.0	A0A0D2PMT2_GOSRA; Uncharacterized protein
STRING	Gorai.008G053100.1	1e-161	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.2	2e-72	BIG PETAL P

Link Out ? help Back to Top
Phytozome	Gorai.008G053100.6

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]