PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G057200.1

Common Name

B456_008G057200, LOC105763159

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 254aa MW: 29368.8 Da PI: 9.8386

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G057200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	47	3.2e-15	9	50	1	42
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 k ien+ r+ f kRr +lKKA+ELS+LCd++ ++ii+ + Gorai.008G057200.1 9 KLIENEKARKRVFEKRRSNLLKKAKELSILCDIKLLLIIYEH 50 569************************************955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.021	1	48	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.7E-17	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.66E-19	1	74	IPR002100	Transcription factor, MADS-box
CDD	cd00120	1.77E-18	2	59	No hit	No description
PRINTS	PR00404	4.7E-11	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.3E-14	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.7E-11	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.7E-11	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MGKRRTEMKL IENEKARKRV FEKRRSNLLK KAKELSILCD IKLLLIIYEH GKEKAEIWPH 60 NNVEAEQIIE WFKQRRIDKT ACDSSASKRR RFGDKFDISD HKNMINHYSE NQLRNLIFEL 120 DAKIAAVMNV NQSKQVLKGV PGSPKNKGKG KEAVIYQEPI ETPQHQSFQT YWPKKNFISY 180 PEYENSSNIP YVPLPVHYVD PSSVQPPYKN ANSSMGYYGP NVNPVLPCIY YPMMPGFPPQ 240 MNASDLGFFP PFN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX577574	2e-53	JX577574.1 Gossypium hirsutum clone NBRI_GE9426 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436735.1	0.0	PREDICTED: truncated transcription factor CAULIFLOWER C-like
Refseq	XP_012436736.1	0.0	PREDICTED: truncated transcription factor CAULIFLOWER C-like
Refseq	XP_012436737.1	0.0	PREDICTED: truncated transcription factor CAULIFLOWER C-like
TrEMBL	A0A0D2T134	0.0	A0A0D2T134_GOSRA; Uncharacterized protein
STRING	Gorai.008G057200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22172	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57390.1	1e-12	AGAMOUS-like 18

Link Out ? help Back to Top
Phytozome	Gorai.008G057200.1
Entrez Gene	105763159

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]