PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G063200.1
Common NameB456_008G063200
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 280aa    MW: 31349.4 Da    PI: 7.0838
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G063200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox628.9e-203394257
                        T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        ++R+t+t++q+++L++l+++   r psa+++++++++l    +++ ++V++WFqN++a+e++
  Gorai.008G063200.1 33 STRWTPTTDQIRILKDLYYNngVRSPSADQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 94
                        58*****************8678*************************************97 PP
2Wus_type_Homeobox114.45.6e-373296265
   Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        ++tRWtPt++Qi+iL++ly+ +G+r+P++++iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  Gorai.008G063200.1 32 SSTRWTPTTDQIRILKDLYYnNGVRSPSADQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 96
                        789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-112096IPR009057Homeodomain-like
PROSITE profilePS5007110.3172995IPR001356Homeobox domain
SMARTSM003891.1E-53199IPR001356Homeobox domain
PfamPF000464.0E-173494IPR001356Homeobox domain
CDDcd000863.12E-73496No hitNo description
Gene3DG3DSA:1.10.10.602.5E-73494IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEPQQQQQQN QQAPNEDCGG GSGKGSFLCR QSSTRWTPTT DQIRILKDLY YNNGVRSPSA  60
DQIQRISARL RQYGKIEGKN VFYWFQNHKA RERQKKRFTT TTNHHVPMQS PTTAANNKYP  120
NITPGYSPTS LSSTGALTVG QIGNYGYGSI TMEKSFRDCS ISACGSSTSV GESLSHNFGW  180
VGFDPTYSSS YTFFEHKKFM EERQKDEDDA EEEAAAPQIE TLPLFPMHSE DVNGFCSNIR  240
PRLDSCYSGW YRSEDGYTGS RASLELSLNP YAGRPQDSI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In the active shoot meristem, it is specifically expressed in a small cell group underneath the presume position of stem cells. {ECO:0000269|PubMed:12208843}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150439e-71AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435648.10.0PREDICTED: protein WUSCHEL-like
SwissprotQ8LL111e-87WUS_PETHY; Protein WUSCHEL
TrEMBLA0A0D2T1D40.0A0A0D2T1D4_GOSRA; Uncharacterized protein
STRINGGorai.008G063200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52442847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-49WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]