PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G082500.1
Common NameB456_008G082500, LOC105763437
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 234aa    MW: 25649.3 Da    PI: 8.173
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G082500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-0581103123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+ksF++  +L  H ++H
  Gorai.008G082500.1  81 YKCEVCNKSFPTYQSLGGHKSSH 103
                         9***************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.65E-1080103No hitNo description
PfamPF139121.7E-1281105IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.22181103IPR007087Zinc finger, C2H2
SMARTSM003550.004681103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SuperFamilySSF576674.65E-10139166No hitNo description
PfamPF139122.4E-12143168IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369144166IPR007087Zinc finger, C2H2
SMARTSM003550.86144166IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MALETLNSPT SAPPLLHHDD TVDHHCVEPW TRRKRTKRSR TENPPTEEEY LALCLLMLAK  60
GTTRNNPSGS AAAKNSLNHN YKCEVCNKSF PTYQSLGGHK SSHRKFVGAD EDPTTTAAAE  120
DKFTASTTAT NSHPMISNQG GKTHTCSICY KTFSSGQALG GHKRCHYEAG SNNNNSGNDG  180
VKSWSQSQRD FDLNLPAGPD ETSMDVLRQD KFCRNDEEAR VRLPTLKHGS CKV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and stems. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437130.11e-176PREDICTED: zinc finger protein AZF1-like
SwissprotQ9SSW14e-48AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A0D2T2H61e-175A0A0D2T2H6_GOSRA; Uncharacterized protein
STRINGGorai.008G082500.11e-175(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2458934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.15e-40zinc-finger protein 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]