PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G091800.1

Common Name

B456_008G091800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CAMTA

Protein Properties

Length: 183aa MW: 21041.7 Da PI: 5.9443

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G091800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	111.1	6.5e-35	2	80	34	118
CG-1 34 pksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 pksg+++L+nrk++r+f+kD y+wkkkkdgkt++E+he+LK+ ++yYa +e+n+tf rrcywlL+++le+ivlvhy+e+k Gorai.008G091800.1 2 PKSGTIVLFNRKMLRNFQKDDYNWKKKKDGKTIKEAHEHLKI------HVYYALGEDNSTFVRRCYWLLDKSLEQIVLVHYRETK 80 9**************************************6......79******************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	46.852	1	85	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.9E-27	1	80	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.3E-29	2	78	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MPKSGTIVLF NRKMLRNFQK DDYNWKKKKD GKTIKEAHEH LKIHVYYALG EDNSTFVRRC 60 YWLLDKSLEQ IVLVHYRETK EVSLATHSNL SLLTYQSTPL LVTEEFDSGI ANTYSEELGE 120 SVNVRNHEMK LLEINTLEWD ELLVANGAID SIASRGDNVS CFDQQNQMAV NDFSNYVSRT 180 IS*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves, sepals, petals, stamen filaments, top of carpels, anthers and siliques, but not in stigmas. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:12218065, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012459975.1	1e-111	PREDICTED: calmodulin-binding transcription activator 5-like isoform X2
Swissprot	Q9LSP8	6e-50	CMTA6_ARATH; Calmodulin-binding transcription activator 6
TrEMBL	A0A0D2SXL9	1e-133	A0A0D2SXL9_GOSRA; Uncharacterized protein
STRING	Gorai.008G091800.1	1e-134	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	3e-54	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Gorai.008G091800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]