PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G092000.1

Common Name

B456_008G092000, LOC105763549

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ZF-HD

Protein Properties

Length: 232aa MW: 26132.2 Da PI: 8.3862

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G092000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	105	4.7e-33	47	102	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 k rY+eClkNhA+ +GghavDGCgEfmp+ g+egt +alkCaAC+CHRnFHR+e+e Gorai.008G092000.1 47 KRRYRECLKNHAVGIGGHAVDGCGEFMPA-GTEGTLDALKCAACNCHRNFHRKETEP 102 679***********************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01566	3.2E-30	49	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-23	49	101	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.0E-29	49	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.453	50	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.5E-29	155	230	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.25E-17	156	229	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	7.2E-25	168	224	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MEFEEQEEEM GLAPSYNSLV NSTAVKMSDA EPGSITPTGQ QQQQQRKRRY RECLKNHAVG 60 IGGHAVDGCG EFMPAGTEGT LDALKCAACN CHRNFHRKET EPNSPNTFPS TDLYFHQPTQ 120 FTPYFRAPTG YLHVAGQQRL LALPSTSGGG GGHSREDQED VSNQGSSRKR FRTKFTHDQK 180 EKMLELAERI GWRIQKHDEL LVQQFCNENG VKRQVFKVWM HNNKHTLGKK P*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	4e-26	169	226	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437238.1	1e-176	PREDICTED: zinc-finger homeodomain protein 2-like
Swissprot	A2Z259	3e-75	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBL	A0A0D2T2Y4	1e-175	A0A0D2T2Y4_GOSRA; Uncharacterized protein
STRING	Gorai.008G092000.1	1e-175	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4505	24	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-72	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Gorai.008G092000.1
Entrez Gene	105763549

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]