PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G106000.1
Common NameB456_008G106000, LOC105763721
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 699aa    MW: 76537.8 Da    PI: 6.0614
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G106000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS325.41.1e-993416972374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         +++L+++Ae +++gd  laq +Larl+++ sp g+p+ R+a+yf+eAL+  l        ++ ++s  s++n++ ++ a+k fse+sPi++
  Gorai.008G106000.1 341 IDQLIQAAELIETGDPVLAQGILARLNHQLSPVGKPFIRAAFYFKEALQLLLPL------NTSNTSVMSNYNMIFKIGAYKSFSEISPIVQ 425
                         689**********************************************99998......666777778888******************* PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         f+++t+Nqa+le +eg++rvHiiDfd+++G+QW++L+q+L  R++g+ps++iT+++sp+s++  el  t e+L+++A+e++++f+++++  
  Gorai.008G106000.1 426 FANFTCNQALLEVFEGCNRVHIIDFDVGYGGQWASLIQELVLRNGGAPSMKITAFASPSSHDDIELGFTIENLKHYASEINMDFDIEIMSL 516
                         ****************************************************************************************855 PP

                GRAS 184 krledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                         ++l++   +  L++ ++Ea+aVnl +  ++ +      +s  + vL++vk+lsPk+vv  ++ +d+++ +F +++++al+ ys l++sl+a
  Gorai.008G106000.1 517 EALNSGsWPLPLHLGENEAIAVNLPIGSFSNY------PSILPLVLRFVKQLSPKIVVSLDRGCDRTDVPFPHHIIHALQSYSGLLESLDA 601
                         5555441355679999**********888877......455568*********************************************76 PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                             + ++  k+Er++l+++i+++v  ++++     e+   Wr+ + ++GF+p+++s+++++qa++l+++++ +g++ve+++ slvl+W++
  Gorai.008G106000.1 602 V-NMNLDALEKIERFFLQPSIEKIVLGRHRS----LERRPPWRSLFIQSGFSPLTFSNFTESQAECLIQRTPIRGFHVEKRQSSLVLCWQR 687
                         6.45669999****************99998....88889*************************************************** PP

                GRAS 365 rpLvsvSaWr 374
                         r+L+++SaWr
  Gorai.008G106000.1 688 RELIAASAWR 697
                         *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.302314677IPR005202Transcription factor GRAS
PfamPF035143.9E-97341697IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MKAMPLSFEE FQGKGALDFS SSTSSCSDSS LLLQHQHQHH QKEGKWQNKG GDCCYVGSEP  60
IDNNNKTRRK RSPSPSSTLS SSLGGGGSGG GASTDTAGVA ATTTVVSATT NTSQSLDVGK  120
CGLGMEDWES VLSGSPNQDQ SILRLIMGDI DDPSMGLNKI LQPPSGGGGG GSENMEFNAG  180
FGMVDHGFGF DSITSSVSLI NNVDPPISCS DFPVTSNPPS LLPPPPPGVF PQQQSHLQVM  240
DEKPQIFNPQ MIINQNQARF TQNPTMFLPL SYAQLQEHSL LSPPPPKRFN SGGPFSGSGP  300
ELYLRRQQQQ QIQMLQQRPI TGKPKIVTDD LANQQLQQAI IDQLIQAAEL IETGDPVLAQ  360
GILARLNHQL SPVGKPFIRA AFYFKEALQL LLPLNTSNTS VMSNYNMIFK IGAYKSFSEI  420
SPIVQFANFT CNQALLEVFE GCNRVHIIDF DVGYGGQWAS LIQELVLRNG GAPSMKITAF  480
ASPSSHDDIE LGFTIENLKH YASEINMDFD IEIMSLEALN SGSWPLPLHL GENEAIAVNL  540
PIGSFSNYPS ILPLVLRFVK QLSPKIVVSL DRGCDRTDVP FPHHIIHALQ SYSGLLESLD  600
AVNMNLDALE KIERFFLQPS IEKIVLGRHR SLERRPPWRS LFIQSGFSPL TFSNFTESQA  660
ECLIQRTPIR GFHVEKRQSS LVLCWQRREL IAASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-333406974375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5274720.0HQ527472.1 Gossypium herbaceum clone NBRI_A_6925 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437503.10.0PREDICTED: scarecrow-like protein 6
SwissprotO813161e-170SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A0D2RD940.0A0A0D2RD94_GOSRA; Uncharacterized protein
STRINGGorai.008G106000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85742739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-154GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]