PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G106100.1
Common NameB456_008G106100, LOC105763724
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 644aa    MW: 71450.8 Da    PI: 5.3453
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G106100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3312.3e-1012856422374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         +++L+++Ae +++gd  laq +Larl+++ sp g+p+ R+a+yf+eAL+  l        ++ ++s+  ++n + ++aa+k fse+sP+++
  Gorai.008G106100.1 285 IDQLIQAAELIETGDPVLAQGILARLNHQLSPVGKPFIRAAFYFKEALQLLLRF------NTTNTSTLYTTNIIFKIAAYKSFSEISPTIQ 369
                         689**********************************************98886......788888888899******************* PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         f ++t+NqaIle +eg++rvHiiDfdi++G+QW++L+q+L  R++g+p ++iT+++  +s ++ el+ t e+L++fA+e+++ f+++++  
  Gorai.008G106100.1 370 FMNFTCNQAILEVFEGCNRVHIIDFDIGYGGQWASLMQELVLRNGGAPCMKITVFACLTSYDEFELRFTIENLKHFANEINMGFDIEIVSL 460
                         *********************************************************9999***************************988 PP

                GRAS 184 krledleleeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         ++l++ +  +L  +++++E++aVnl +  ++ +      +s+ + +L++vk+lsPk+vv +++ +d+++ +F +++++al+ ys l++sl+
  Gorai.008G106100.1 461 EALNSCSWYSLplHFSENETIAVNLPIGSFSNY------PSTLPLILRFVKQLSPKIVVSSDRGCDRTDVPFPHHIIHALQSYSGLLESLD 545
                         88988887776448999**********888877......444567*********************************************7 PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         a    + ++  k+Er++l+++i+++v  ++++     e+   Wr+ + ++GF+p+++s+++++qa++l+++++ +g++ve+++ +lvl+W+
  Gorai.008G106100.1 546 AV-NMNLNALEKIERFFLQPSIEKIVLGRHRS----LERRPPWRSLFIQFGFSPLTFSNFTESQAECLVQRTPIRGFHVEKRQSALVLCWQ 631
                         66.45669999****************99998....88889************************************************** PP

                GRAS 364 drpLvsvSaWr 374
                         +r+L+++SaWr
  Gorai.008G106100.1 632 RRELIAASAWR 642
                         **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.146258622IPR005202Transcription factor GRAS
PfamPF035147.9E-99285642IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MNAIPLSFEE FQGKGALDFA SSTSSYSNSS LLLQHQQQKK WQNNEESCCY VGFDPTSTRS  60
PSPPTSSSTL SSSFDGGSGG ASTDSSGVAE TVTVSKGKSQ SFDIGTGKCG LNMEDWENDQ  120
SILRLIMGDV DDPSLGLNKI LQPPSGSCSG GGSSENIEFN AGFGMVDHSF GFDSITSSVS  180
LMNNDMVSCL NPVFDQNQAE FTQNPVMLFP SYAAEMQEHN LLSPPPPKRF NSGTSGPNYQ  240
VPKVQFSGSG PEHYLQRQQL LHQRPTTPKI VTDEMANQQL QQAIIDQLIQ AAELIETGDP  300
VLAQGILARL NHQLSPVGKP FIRAAFYFKE ALQLLLRFNT TNTSTLYTTN IIFKIAAYKS  360
FSEISPTIQF MNFTCNQAIL EVFEGCNRVH IIDFDIGYGG QWASLMQELV LRNGGAPCMK  420
ITVFACLTSY DEFELRFTIE NLKHFANEIN MGFDIEIVSL EALNSCSWYS LPLHFSENET  480
IAVNLPIGSF SNYPSTLPLI LRFVKQLSPK IVVSSDRGCD RTDVPFPHHI IHALQSYSGL  540
LESLDAVNMN LNALEKIERF FLQPSIEKIV LGRHRSLERR PPWRSLFIQF GFSPLTFSNF  600
TESQAECLVQ RTPIRGFHVE KRQSALVLCW QRRELIAASA WRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-292846424375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3951681e-139GQ395168.1 Gossypium hirsutum cultivar Delta Opal clone MONCS2191 SSR marker DPL0796 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437504.10.0PREDICTED: scarecrow-like protein 6
SwissprotO813161e-168SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A0D2SYJ30.0A0A0D2SYJ3_GOSRA; Uncharacterized protein
STRINGGorai.008G106100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85742739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-162GRAS family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]