PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G106500.1
Common NameB456_008G106500, LOC105763727
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 320aa    MW: 36075.1 Da    PI: 6.1032
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G106500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011426123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C ksF +   L  H+r+H
  Gorai.008G106500.1  4 HRCKLCLKSFINGRALGGHMRSH 26
                        79********************9 PP
2zf-C2H213.30.00024189211123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+++F++   L  H  +H
  Gorai.008G106500.1 189 YRCETCNRVFKSYQALGGHRASH 211
                         9************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.03E-5331No hitNo description
PROSITE profilePS5015710.138431IPR007087Zinc finger, C2H2
PfamPF139125.7E-7427IPR007087Zinc finger, C2H2
SMARTSM003550.1426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576672.87E-6189263No hitNo description
PfamPF139126.6E-11189213IPR007087Zinc finger, C2H2
SMARTSM003550.02189211IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.801189216IPR007087Zinc finger, C2H2
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
PfamPF139121.3E-9240263IPR007087Zinc finger, C2H2
SMARTSM003550.46241263IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.037241263IPR007087Zinc finger, C2H2
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEKHRCKLCL KSFINGRALG GHMRSHMLNL PIHVNQVSQE SVSASASYSS DEDDDDKKEQ  60
IYGLRENPKR SVRMVDPEFI DAGSVVVQDR ESETESSKNL TRRRSKRTRK TLYQHEEEEV  120
VKVNITESVS SISDTTTEED VAFCLMMLSR DQWKQHDEQE QDDESEEETE ESEEYLKSTK  180
PNRSTRGKYR CETCNRVFKS YQALGGHRAS HKKMKPYSPA TEKIHEPPEN VGTSIPEKKT  240
HECPVCFRIF SSGQALGGHK RSHVTGQVIA TSTTKTAVTS SKKLGDSLID LNLPAPMDDD  300
DISQIEVSAV SDAEFVKPF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437509.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A0D2SYJ70.0A0A0D2SYJ7_GOSRA; Uncharacterized protein
STRINGGorai.008G106500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-55C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]