PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G106900.1

Common Name

B456_008G106900, LOC105763732

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 472aa MW: 51510.8 Da PI: 6.3211

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G106900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.6	1.1e-13	283	353	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC......................TTS-.STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkas...................kapskK.lsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++s + + +Ka++L +++eY+k+Lq Gorai.008G106900.1 283 HNQSERKRRDKINQRMKTLQKLVPNSSkgnnltegyvdrcgdnhllPHKYPFmTDKASMLDEVIEYLKQLQ 353 9**********************888************985555557***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	5.2E-16	276	369	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.03E-14	276	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.32	278	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.93E-14	283	357	No hit	No description
Pfam	PF00010	2.3E-11	283	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.8E-13	284	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MSQCVPSWEL DDNNPLTTRH HSFRFNSNST APDVPMLDYE VAELTWENGQ LAMHSLGPPR 60 VVAKQLNATT WDKPRASGGG GGTLESIVNQ ATCFPYGSKD SVGAGGDELV WLDHHRVSAA 120 ASSSSATMAM DALVPCSEDK TTTAHVLESM PGLGGGGTCM MGCSTRVGSC SGTVNTQDDV 180 TRKREKAVGV QVAPPEWEQS ASASATFGRD SHRNVTVDTY DKDFGVGFTS ISHGSIENTK 240 TATDNDHDSA SHSKPQEETG EEDKKETMKS SISTKRSRAA AIHNQSERKR RDKINQRMKT 300 LQKLVPNSSK GNNLTEGYVD RCGDNHLLPH KYPFMTDKAS MLDEVIEYLK QLQAQVQMMN 360 RMNLPSMMLQ QQLQMSMMAP MGMGMSVMDM NFMGRPNIIG ISPVLSNPFM TMNTPWDGSN 420 NNDRLQQAAS MTDPLSTFLA CQSQPMTMDA YSRMAAMYQQ MQQPPASSSK S*

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MSQCVPSWEL DDNNPLTTRH HSFRFNSNST APDVPMLDYE VAELTWENGQ LAMHSLGPPR  60
VVAKQLNATT WDKPRASGGG GGTLESIVNQ ATCFPYGSKD SVGAGGDELV WLDHHRVSAA  120
ASSSSATMAM DALVPCSEDK TTTAHVLESM PGLGGGGTCM MGCSTRVGSC SGTVNTQDDV  180
TRKREKAVGV QVAPPEWEQS ASASATFGRD SHRNVTVDTY DKDFGVGFTS ISHGSIENTK  240
TATDNDHDSA SHSKPQEETG EEDKKETMKS SISTKRSRAA AIHNQSERKR RDKINQRMKT  300
LQKLVPNSSK GNNLTEGYVD RCGDNHLLPH KYPFMTDKAS MLDEVIEYLK QLQAQVQMMN  360
RMNLPSMMLQ QQLQMSMMAP MGMGMSVMDM NFMGRPNIIG ISPVLSNPFM TMNTPWDGSN  420
NNDRLQQAAS MTDPLSTFLA CQSQPMTMDA YSRMAAMYQQ MQQPPASSSK S*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	286	291	ERKRRD
2	287	292	RKRRDK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gra.35	0.0	seedling

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	48775856	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Required during the fertilization of ovules by pollen. {ECO:0000269\|PubMed:15634699}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437517.1	0.0	PREDICTED: transcription factor UNE10-like isoform X1
Swissprot	Q8GZ38	1e-106	UNE10_ARATH; Transcription factor UNE10
TrEMBL	A0A0D2PSK9	0.0	A0A0D2PSK9_GOSRA; Uncharacterized protein
STRING	Gorai.008G106900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3919	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	1e-95	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G106900.1
Entrez Gene	105763732

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]