PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G106900.5
Common NameB456_008G106900, LOC105763732
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 425aa    MW: 45986.4 Da    PI: 5.1032
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G106900.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.63e-052833063255
                         ..TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  32 kapskKlsKaeiLekAveYIksLq 55 
                         +++s++ +Ka++L +++eY+k+Lq
  Gorai.008G106900.5 283 HNQSERTDKASMLDEVIEYLKQLQ 306
                         56899******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.0E-5282322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-4283310No hitNo description
SuperFamilySSF474591.57E-6285329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MSQCVPSWEL DDNNPLTTRH HSFRFNSNST APDVPMLDYE VAELTWENGQ LAMHSLGPPR  60
VVAKQLNATT WDKPRASGGG GGTLESIVNQ ATCFPYGSKD SVGAGGDELV WLDHHRVSAA  120
ASSSSATMAM DALVPCSEDK TTTAHVLESM PGLGGGGTCM MGCSTRVGSC SGTVNTQDDV  180
TRKREKAVGV QVAPPEWEQS ASASATFGRD SHRNVTVDTY DKDFGVGFTS ISHGSIENTK  240
TATDNDHDSA SHSKPQEETG EEDKKETMKS SISTKRSRAA AIHNQSERTD KASMLDEVIE  300
YLKQLQAQVQ MMNRMNLPSM MLQQQLQMSM MAPMGMGMSV MDMNFMGRPN IIGISPVLSN  360
PFMTMNTPWD GSNNNDRLQQ AASMTDPLST FLACQSQPMT MDAYSRMAAM YQQMQQPPAS  420
SSKS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.350.0seedling
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO487758560.0
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437519.10.0PREDICTED: transcription factor UNE10-like isoform X3
SwissprotQ8GZ384e-90UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A0D2T4060.0A0A0D2T406_GOSRA; Uncharacterized protein
STRINGGorai.008G106900.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.19e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]