PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G108600.1
Common NameB456_008G108600, LOC105762417
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 206aa    MW: 23024.6 Da    PI: 4.9924
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G108600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-1983134256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                         +ykGVr+++ +g ++AeIrdp   + k +r++lg++ t+e+Aa a+++a+ +++g+
  Gorai.008G108600.1  83 HYKGVRRRP-WGTYAAEIRDP---KrKGARIWLGTYETPEDAALAYDRAAFEMRGA 134
                         7********.**********8...4334**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-2982143No hitNo description
PfamPF008478.5E-1483133IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2283142IPR016177DNA-binding domain
PROSITE profilePS5103223.28883141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-3183142IPR001471AP2/ERF domain
SMARTSM003807.3E-3683147IPR001471AP2/ERF domain
PRINTSPR003675.2E-128495IPR001471AP2/ERF domain
PRINTSPR003675.2E-12123143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MYGESVDIGL LESIGRYLLE DDFETQCPAT DDTINVDQWI TFDQFLDDFA VAGELNVSFP  60
TREVNADSEV VETKPHALPK KAHYKGVRRR PWGTYAAEIR DPKRKGARIW LGTYETPEDA  120
ALAYDRAAFE MRGAKAKLNF PHLVGSDQVE PVRVSNNKRR SPEPASSSAW LSSASSTSDN  180
GTPTSKRRMN EINSVVKSEF ELNMY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2980148270ATERF1
3gcc_A3e-2980148270ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269|PubMed:7756828}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435679.11e-152PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotQ404794e-42ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A0D2T4401e-151A0A0D2T440_GOSRA; Uncharacterized protein
STRINGGorai.008G108600.11e-152(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.15e-43ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]