PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G114300.1
Common NameB456_008G114300, LOC105763801
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 207aa    MW: 22308.2 Da    PI: 7.0378
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G114300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.45.6e-39101101100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+++Cv+apyf ++q +++fa+vhk+FGasn  kll+ +p ++r da+ +l+yeA ar+rdPvyG++g+i++lqqq+ +l
  Gorai.008G114300.1  10 PCGACKFLRRKCVRGCVFAPYFDSDQgTAHFAAVHKVFGASNAAKLLQGTPVHRRVDAVFTLCYEALARVRDPVYGCAGHIFTLQQQVVNL 100
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +aela+++++
  Gorai.008G114300.1 101 QAELAYIQAR 110
                         *****99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7259111IPR004883Lateral organ boundaries, LOB
PfamPF031956.8E-3810108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSAANNGTGP CGACKFLRRK CVRGCVFAPY FDSDQGTAHF AAVHKVFGAS NAAKLLQGTP  60
VHRRVDAVFT LCYEALARVR DPVYGCAGHI FTLQQQVVNL QAELAYIQAR LSTLQCLSLV  120
LPQSQAECRS PTTFHSASEL GSDLVCSSDT SMNVFDLPQP QQTSIELAGS PNPFNRVTED  180
EDLQALAWEL VSQCHPGVRF RPSTSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-361011911119LOB family transfactor Ramosa2.1
5ly0_B9e-361011911119LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6154425e-53JX615442.1 Gossypium hirsutum clone NBRI_GE59429 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437603.11e-152PREDICTED: LOB domain-containing protein 19-like
SwissprotO813221e-63LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A0D2PSY31e-151A0A0D2PSY3_GOSRA; Uncharacterized protein
STRINGGorai.008G114300.11e-152(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.15e-66LOB domain-containing protein 31
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]