PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G116800.1
Common NameB456_008G116800, LOC105762429
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 294aa    MW: 32512.7 Da    PI: 9.4311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G116800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-203484256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        ++ GVr+++ +grWvAeI+d s   +r r +lg+++t+eeAa+a+++a+++l+ge
  Gorai.008G116800.1 34 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 84
                        589******.7*********43...36**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-153484IPR001471AP2/ERF domain
CDDcd000183.25E-313491No hitNo description
SMARTSM003807.9E-373497IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-283492IPR001471AP2/ERF domain
PROSITE profilePS5103220.5343491IPR001471AP2/ERF domain
PRINTSPR003672.9E-73546IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-203591IPR016177DNA-binding domain
PRINTSPR003672.9E-75773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAGPESTTKT TTVITNTNNT TTTMAQPLTK PTRRFVGVRQ RPSGRWVAEI KDSSQRVRLW  60
LGTYDTPEEA ARAYDEAARA LRGENARTNF ASVNNSSTQP VISGCNGRQN GLSAFSSLKA  120
KLSKNLQSIM ARNGENKSTK SRVSDHFTFA SIFHFRNNQY HNNQDQNIHK VVQPSIVVPR  180
IGNEPPPPPP PQPRLSWDSS SVSDCSNEWI GFRQHGLDSD GSDIGEVSFR DHHGFSDEMM  240
GWVDSPDHHH NTISSRLISG DYDDDNHGSR SKRFKVSSSV VVPPTFSGSS YHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1434901471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6160810.0JX616081.1 Gossypium hirsutum clone NBRI_GE60472 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435689.10.0PREDICTED: ethylene-responsive transcription factor 11-like
TrEMBLA0A0D2T4H20.0A0A0D2T4H2_GOSRA; Uncharacterized protein
STRINGGorai.008G116800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1829289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.19e-17related to AP2 11
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]