PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G126200.2
Common NameB456_008G126200, LOC105763914
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 654aa    MW: 73180.8 Da    PI: 6.8977
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G126200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.17.9e-24115215198
                         EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         f+k+lt sd++++g +++ +k+a+e+     +++ + +++lt +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   +
  Gorai.008G126200.2 115 FCKILTASDTSTHGGFSVLRKHATEClppldMNQATPTQELTAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--R 203
                         99****************************9555556679************************************************..3 PP

                         SSEE..EEEEE- CS
                  B3  87 rsefelvvkvfr 98 
                          +++el+v+v+r
  Gorai.008G126200.2 204 GDNGELRVGVRR 215
                         489999****98 PP
2Auxin_resp103.52.5e-34241320183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aaha+ t++ F v+Y+Pr+  s+F++ v+k+++a++++ svGmRfkm+fe+eds+err++Gt+vgv d++p +W++SkWrsLk
  Gorai.008G126200.2 241 AAHAVMTQTLFVVYYKPRT--SQFIIGVSKYLEAINNRSSVGMRFKMRFEGEDSPERRFTGTIVGVGDASP-HWSESKWRSLK 320
                         79****************6..9**********************************************999.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-39105244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-40108230IPR015300DNA-binding pseudobarrel domain
CDDcd100177.04E-21113215No hitNo description
SMARTSM010191.1E-22115217IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111115217IPR003340B3 DNA binding domain
PfamPF023627.6E-22115215IPR003340B3 DNA binding domain
PfamPF065071.0E-31241320IPR010525Auxin response factor
PfamPF023092.9E-7518574IPR033389AUX/IAA domain
SuperFamilySSF542779.81E-12535614No hitNo description
PROSITE profilePS5174525.71538630IPR000270PB1 domain
PfamPF023091.8E-5581617IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MAYCLGVDDL YPELWKLCAG PLVEIPHVQE RVFYFPQGHI EQLEASTNQE LNYEAPLFNL  60
SSKILCRVLH VQLLAEQETD EVYAQITLQP EPDQSELTSP DPFPTEVPER EVHSFCKILT  120
ASDTSTHGGF SVLRKHATEC LPPLDMNQAT PTQELTAKDL HGYEWRFKHI FRGQPRRHLL  180
TTGWSTFVTS KRLVAGDAFV FLRGDNGELR VGVRRLGNQQ STMPSSVISS QNMHLGVLAT  240
AAHAVMTQTL FVVYYKPRTS QFIIGVSKYL EAINNRSSVG MRFKMRFEGE DSPERRFTGT  300
IVGVGDASPH WSESKWRSLK IQWDEPAMIQ RPERVSPWEI EPFSASASIN LIQPAVKSKR  360
PRPVYILASD TTTNSTGSAF WCHGSTKSHE LARAGSIAEV QSSESSQVVW PMRQNEADAG  420
YNTRARLENA WPPSSLVNVS LNFFRNPADA SPVELRTSND VMRDQVEKGK KLEISTGCRL  480
FGFNLTNSNS AVSGTVIAPS HIDENPETFQ SPKQQKQNAS ETSTKEIKAK HGTTSSMRTR  540
TKVQMQGIAV GRAIDLTVLK GYDDLINELE KMFDIEGELR HRTKWSVVFT DNEGDMMLVG  600
DDPWVGFCKM VRKIFIYSVD EVKKINGRCK FQASSLEGEG TVVSLGLEHR SGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-165834517357Auxin response factor 1
4ldw_A1e-165834517357Auxin response factor 1
4ldw_B1e-165834517357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358362KRPRP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437775.10.0PREDICTED: auxin response factor 18-like isoform X2
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A0D2SZM10.0A0A0D2SZM1_GOSRA; Auxin response factor
STRINGGorai.008G126200.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]