PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G137900.1
Common NameB456_008G137900, LOC105764045
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 320aa    MW: 35960 Da    PI: 6.7323
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G137900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1079.6e-34160217259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk+ver+ +dp++v++tYeg+H+h+
  Gorai.008G137900.1 160 EDGYRWRKYGQKAVKNSPFPRSYYRCTSTSCNVKKRVERCFTDPSIVVTTYEGQHTHP 217
                         8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381305.0E-1085319IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.802.3E-35144219IPR003657WRKY domain
SuperFamilySSF1182901.44E-29151219IPR003657WRKY domain
PROSITE profilePS5081131.594154219IPR003657WRKY domain
SMARTSM007743.6E-40159218IPR003657WRKY domain
PfamPF031062.1E-26160217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MHTFMERKEG LKMEDYVMGN SINSNSSFCD YTGNGFPLQS VFDSCSEDDN NKFSLGFMEL  60
LGVQDFTCPL FDVAQQVPVS TKMESPEQGF NLPATPNSSS VSSGSSEAVN GEPVKVEDDQ  120
EEEDDQQKNK KQLKVKKANQ KRQREPRFAF MTKSEVDHLE DGYRWRKYGQ KAVKNSPFPR  180
SYYRCTSTSC NVKKRVERCF TDPSIVVTTY EGQHTHPSPL MPRPNLVGST INSGISAGAA  240
AAFSVPMQRN TQSHYYYQQQ QQHQHPFANS LSSLNFGHNG PSIDSSFLHE RRLCTSGQSL  300
LKDHGLLQDI IPSHMLKEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-271522191077Probable WRKY transcription factor 4
2lex_A5e-271522191077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM4384750.0KM438475.1 Gossypium aridum WRKY104 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437948.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229003e-66WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A0D2PUG30.0A0A0D2PUG3_GOSRA; WRKY transcription factor
STRINGGorai.008G137900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61522647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.14e-54WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  5. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]