PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G137900.2

Common Name

B456_008G137900

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 230aa MW: 26597.2 Da PI: 10.1844

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G137900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107.8	5.5e-34	70	127	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk+ver+ +dp++v++tYeg+H+h+ Gorai.008G137900.2 70 EDGYRWRKYGQKAVKNSPFPRSYYRCTSTSCNVKKRVERCFTDPSIVVTTYEGQHTHP 127 8********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-35	54	129	IPR003657	WRKY domain
SuperFamily	SSF118290	7.98E-30	61	129	IPR003657	WRKY domain
PROSITE profile	PS50811	31.594	64	129	IPR003657	WRKY domain
SMART	SM00774	3.6E-40	69	128	IPR003657	WRKY domain
Pfam	PF03106	1.2E-26	70	127	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MTNKKTRNSE YTFFLFFFKF NPLFSQDKDG FFMLMMGFWV CRLKVKKANQ KRQREPRFAF 60 MTKSEVDHLE DGYRWRKYGQ KAVKNSPFPR SYYRCTSTSC NVKKRVERCF TDPSIVVTTY 120 EGQHTHPSPL MPRPNLVGST INSGISAGAA AAFSVPMQRN TQSHYYYQQQ QQHQHPFANS 180 LSSLNFGHNG PSIDSSFLHE RRLCTSGQSL LKDHGLLQDI IPSHMLKEE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-28	59	129	7	77	Probable WRKY transcription factor 4
2lex_A	1e-28	59	129	7	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669815	0.0	KF669815.1 Gossypium hirsutum WRKY transcription factor 80 (WRKY80) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437948.1	1e-139	PREDICTED: probable WRKY transcription factor 23
Swissprot	O22900	3e-60	WRK23_ARATH; WRKY transcription factor 23
TrEMBL	A0A0D2REV9	1e-173	A0A0D2REV9_GOSRA; Uncharacterized protein
STRING	Gorai.008G137900.1	1e-138	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	2e-58	WRKY DNA-binding protein 23

Link Out ? help Back to Top
Phytozome	Gorai.008G137900.2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Prát T, et al. WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity. PLoS Genet., 2018. 14(1): p. e1007177 [PMID:29377885]