PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G138900.2

Common Name

B456_008G138900, LOC105764057

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 239aa MW: 26768.7 Da PI: 6.2518

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G138900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.4	8.3e-30	45	102	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YY+C+++ gC++kk+ver+++d ++++itY+++Hnh+ Gorai.008G138900.2 45 DSWSWRKYGQKPIKGSPYPRGYYKCSTSkGCSAKKQVERCKTDASMLIITYTSSHNHP 102 99*********************9988**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.5E-31	38	104	IPR003657	WRKY domain
SuperFamily	SSF118290	1.27E-25	41	104	IPR003657	WRKY domain
SMART	SM00774	3.9E-35	43	103	IPR003657	WRKY domain
PROSITE profile	PS50811	31.031	45	104	IPR003657	WRKY domain
Pfam	PF03106	5.4E-25	45	102	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MDGSISPKQN QSQASKRRKV VERTVVTVKM GENGGKLKND GPPYDSWSWR KYGQKPIKGS 60 PYPRGYYKCS TSKGCSAKKQ VERCKTDASM LIITYTSSHN HPSPHLHNTK TLSQSPTKEP 120 QSDDDDGDND DRAPTTKQEH LPDKDEDQFH YLQSPLSFPQ NQEEDPFSGN LERSTVGLLL 180 DEEPVSCCSR MKAASSSPTP KSEENDFFDE LEELPICSAF TRFMRSKFFD EGIPVVPP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-21	45	104	18	79	Disease resistance protein RRS1
5w3x_D	4e-21	45	104	18	79	Disease resistance protein RRS1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM438476	0.0	KM438476.1 Gossypium aridum WRKY105 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437961.1	1e-178	PREDICTED: probable WRKY transcription factor 65 isoform X2
Refseq	XP_012437962.1	1e-178	PREDICTED: probable WRKY transcription factor 65 isoform X2
Refseq	XP_012437963.1	1e-178	PREDICTED: probable WRKY transcription factor 65 isoform X2
Refseq	XP_012437964.1	1e-178	PREDICTED: probable WRKY transcription factor 65 isoform X2
TrEMBL	A0A0D2T080	1e-177	A0A0D2T080_GOSRA; Uncharacterized protein
STRING	Gorai.008G138900.1	1e-178	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	4e-27	WRKY DNA-binding protein 35

Link Out ? help Back to Top
Phytozome	Gorai.008G138900.2
Entrez Gene	105764057

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]