PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G139000.1

Common Name

B456_008G139000

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 597aa MW: 67206.7 Da PI: 5.7427

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G139000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	275.5	1.6e-84	212	582	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl....fse 86 lv+lLl++Ae v +++e+a++lL+r + +as++++p+qR++ yf+eAL++r+ + ++ ++k ++ ++ +e+ ++l +e Gorai.008G139000.1 212 LVHLLLTAAEKVGYEQFERANRLLSRCEWIASERANPVQRIVYYFAEALRERIDKgMGRIIAKEPEMIFKT---GIENGLNTNLisvrMHE 299 68****************************************************5555555555333332...2222222222233599 PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176 P+ ++++++ qaI e v++++++HiiD+++ G+QW L+qaL++R+ + l+iT+vg + +e++ etg+rL+++A+++++pf Gorai.008G139000.1 300 YVPFSQVTQFMGIQAIIENVASASKIHIIDLELRSGVQWTGLMQALSEREvRHVEILKITAVGF---VGNEKIAETGKRLESVAASFKLPF 387 ************************************************77778*****...78****************** PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 +f +++++++ed++ e +++ ++E+l+V + l l ++ +++++le+ +++++k+l+P++v+v+e ea+hns+sF++rf+eal +ys++ Gorai.008G139000.1 388 SFIAVYVEDMEDIKEELFKIGNDESLVVFCPLVLRTMISRPTCLEN----LMRVMKTLNPTIVIVIEIEANHNSPSFVNRFIEALFFYSTF 474 **********************************99999999....************************************* PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg.yrveeesg 356 fd+l++ l +e e r+ vE + l + i+n+va+eg+er+ r +le W++ + ++ ++++ +se+ q +l++++++ ++++ + Gorai.008G139000.1 475 FDCLDTCLEHEGELRAGVESV-LCNGIRNIVAMEGKERVVRSVKLEVWSAFFARFRMTELGFSESSLYQGSLVIKQFPsAASyCTLDKCGK 564 ****************9.999*************************************************6555346777888 PP GRAS 357 slvlgWkdrpLvsvSaWr 374 s++ gWk+ p+ svSaW+ Gorai.008G139000.1 565 SVIVGWKGTPVQSVSAWK 582 999************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.464	186	560	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.5E-82	212	582	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 597 aa Download sequence Send to blast
MDNGLFPFSS PFDFNGIQGN YSLPDFEKDG TVIKGKHDPL LGFQEIGDDP DNDPVFPNHG 60 LYQNVTKMSE NQEQQQGRAA TKSAFSDEFS LSSVFSGNMA FQEFSRPENM KPIKDCNMQS 120 SCRLSSLELL TNYGNGFKKL RFSKYVGSDG GDGTDKRGGG QKKLSAEEIM RVTGARYIQL 180 SDMRYDDFSM IMHPFGHALS GLSDDETKDV ELVHLLLTAA EKVGYEQFER ANRLLSRCEW 240 IASERANPVQ RIVYYFAEAL RERIDKGMGR IIAKEPEMIF KTGIENGLNT NLISVRMHEY 300 VPFSQVTQFM GIQAIIENVA SASKIHIIDL ELRSGVQWTG LMQALSEREV RHVEILKITA 360 VGFVGNEKIA ETGKRLESVA ASFKLPFSFI AVYVEDMEDI KEELFKIGND ESLVVFCPLV 420 LRTMISRPTC LENLMRVMKT LNPTIVIVIE IEANHNSPSF VNRFIEALFF YSTFFDCLDT 480 CLEHEGELRA GVESVLCNGI RNIVAMEGKE RVVRSVKLEV WSAFFARFRM TELGFSESSL 540 YQGSLVIKQF PSAASYCTLD KCGKSVIVGW KGTPVQSVSA WKFSRDRGRV FGNYRF*

Sequence ? help Back to Top

Protein Sequence Length: 597 aa Download sequence Send to blast

MDNGLFPFSS PFDFNGIQGN YSLPDFEKDG TVIKGKHDPL LGFQEIGDDP DNDPVFPNHG  60
LYQNVTKMSE NQEQQQGRAA TKSAFSDEFS LSSVFSGNMA FQEFSRPENM KPIKDCNMQS  120
SCRLSSLELL TNYGNGFKKL RFSKYVGSDG GDGTDKRGGG QKKLSAEEIM RVTGARYIQL  180
SDMRYDDFSM IMHPFGHALS GLSDDETKDV ELVHLLLTAA EKVGYEQFER ANRLLSRCEW  240
IASERANPVQ RIVYYFAEAL RERIDKGMGR IIAKEPEMIF KTGIENGLNT NLISVRMHEY  300
VPFSQVTQFM GIQAIIENVA SASKIHIIDL ELRSGVQWTG LMQALSEREV RHVEILKITA  360
VGFVGNEKIA ETGKRLESVA ASFKLPFSFI AVYVEDMEDI KEELFKIGND ESLVVFCPLV  420
LRTMISRPTC LENLMRVMKT LNPTIVIVIE IEANHNSPSF VNRFIEALFF YSTFFDCLDT  480
CLEHEGELRA GVESVLCNGI RNIVAMEGKE RVVRSVKLEV WSAFFARFRM TELGFSESSL  540
YQGSLVIKQF PSAASYCTLD KCGKSVIVGW KGTPVQSVSA WKFSRDRGRV FGNYRF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-34	220	581	27	378	Protein SCARECROW
5b3h_A	2e-34	220	581	26	377	Protein SCARECROW
5b3h_D	2e-34	220	581	26	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012437965.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A0D2T5R9	0.0	A0A0D2T5R9_GOSRA; Uncharacterized protein
STRING	Gorai.008G139000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16533	9	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	7e-52	RGA-like 2

Link Out ? help Back to Top
Phytozome	Gorai.008G139000.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]