PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G155100.1

Common Name

B456_008G155100, LOC105764222

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1749aa MW: 195859 Da PI: 5.756

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G155100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.2	1.3e-18	29	83	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++ ++yps+++r+eL+ +lgL++rq ++WF+ rR k++k Gorai.008G155100.1 29 KRKMKTASQLEVLEKTYATEMYPSEATRAELSVQLGLSDRQLQMWFCHRRLKDRK 83 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-18	12	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.11E-15	20	83	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.552	24	84	IPR001356	Homeobox domain
SMART	SM00389	1.8E-17	26	88	IPR001356	Homeobox domain
CDD	cd00086	3.82E-14	27	83	No hit	No description
Pfam	PF00046	3.6E-16	29	83	IPR001356	Homeobox domain
PROSITE profile	PS50827	17.347	551	610	IPR018501	DDT domain
SMART	SM00571	3.9E-23	551	610	IPR018501	DDT domain
Pfam	PF02791	1.2E-17	552	607	IPR018501	DDT domain
Pfam	PF05066	6.4E-13	733	801	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.7E-8	941	980	IPR028942	WHIM1 domain
Pfam	PF15613	1.1E-10	1124	1195	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1749 aa Download sequence Send to blast
METGGLSGGD GGSSEGEKKK PQEGEAKVKR KMKTASQLEV LEKTYATEMY PSEATRAELS 60 VQLGLSDRQL QMWFCHRRLK DRKAAPLKRQ RKDSTSSAHL VGVAGEEMGG SEAGNEHGLG 120 GSSFLGHGLD LKRVVPRAGM TIPRYYEMPH SMAELELRAI KFAELQLGEP IRDDGPMFGM 180 EFDPLPPGAF GAPIGASTAV QQKQPGGPFE TKIYDRRDTK TVKGSVRAVC EYQFLLEQPT 240 VRTETYGRFP LSVNYGLPTD GPNARALSLA AGSSSLLGNE QVQPGYGFPG QIPNLNLLPQ 300 QSRPGHLLPT ASGEYDYVSR TNTSTNTALD ANIGSHPISA LGSPFVSSDR RVCLDDDVLR 360 KERKRKGEED RIAREIEAHE KRIRRELEKQ DMLKRKREEQ IRKEMRRHEH EKRKEEERLL 420 REKHREEERY QREQRRELER REKFLMKESI RAERLRQKEE LRKEKEAARL RAANERAIAR 480 KLAKESMEPV EDEYLELMEI ATSSQGLSLT LPLGFEALQN LDIFRDKLCE FPPKTVQLKR 540 PFSIQPWNGS EENVGNLLMV WRFLITFADV LGLWPFTLDE LVQAFHDYDP RLLGEIHVAL 600 LRSIIKDIED VARTPSTGAG ASQNSAANPG GGHPQIVEGA YAWGFDIRSW QRHLNVLTWP 660 EILRQFALSA GFGPQLKKRN IEQPYLCDGN EGNDGEDIIT NLRNGAAAEN AIAIMQERGF 720 SNPCRSRHRL TPGTVKFAAF HILSLEGSKG LTVLEVAEKI QKSGLRDLTT NKAQEASIAA 780 AFSRDTKLFD RTAPSTYCVR SPYRKDPADA EAILSAARER IQVFKSEFLS VDAEVAERDE 840 DSESDIAEDP VVDDLGAEIN AKKEIHNSEE RSSSVRETIS GKEESGVMET PQVEVGNACK 900 GLSSPHSGGF DKVKHIDAST EQSAGAASAG QEDMEIDESN PGELWVQGLM EGDYSDLSVE 960 ERLNALVALI SIVIEGNFIR IVLKERLEAA NALKKQIWTE AQLDKRRMKE DFVLRTYYSY 1020 VRNPVKNRLV MTSAECRESP QIIGDKKDHD SSVYHVVQQE CLNNSQNDQN CLNNMSTEGN 1080 LPVQDFSFGP DNLQYQQPGY ALDRSRSLLK SYIGHKAEEM YAYRSLPLGQ DRRRNRYWRF 1140 TTTSCNDPGC GRIFIELLDG RWRLIDTEEG FGALLSSLDV RGIRESLLHA MLLKIEMSFK 1200 EAVARNKLHV NERQKGDTAK QKANEMASGL DWSVYSESPS SILCGSDSDM PETSSFSIEL 1260 GRDENEKNNA LKRYQDFEKW MWKGCFSSLT FSVTKYGERM CKELLGVCDS CFNVYFVKDN 1320 HCPSCHTTYI ASKSALIFSE HVAQCAQKMQ MGAELALDGS VFSPMRIRLI KLQLALLEVS 1380 IPFEALQSTW TEDYRNSWGM KLDSSTTAEE LLQILTLLES SIRRDYLSSK FETTSEVLSP 1440 SNLSGHHVDY SFNLEAVPVL PWIPKTTAAV ALRLMEFNAA ISYTLTQGAE TKRDRGAEGF 1500 MELPPSKYAF VKNHQDDETM QTPNQVKYLQ KASWDDVGIG FSGSGRGEVR RRGLGVICGG 1560 RYQRRPANSR SGSRERIATA KSGRLRPVVE WKSRSHRQGG RNHGRRSSRR PKVANRMVES 1620 AGEGESRKEI MGKSSRSCGM NAWNGDEVAL LETGTADNGR SSESSGYKDE IRDECDYEAV 1680 DEYGGGFNGK DDDGEGSDYD IDGGEEAEIE ERNLNGGYIK ENSDEGVRDA ADDLPYGYST 1740 EGCSGFSE*

Sequence ? help Back to Top

Protein Sequence Length: 1749 aa Download sequence Send to blast

METGGLSGGD GGSSEGEKKK PQEGEAKVKR KMKTASQLEV LEKTYATEMY PSEATRAELS  60
VQLGLSDRQL QMWFCHRRLK DRKAAPLKRQ RKDSTSSAHL VGVAGEEMGG SEAGNEHGLG  120
GSSFLGHGLD LKRVVPRAGM TIPRYYEMPH SMAELELRAI KFAELQLGEP IRDDGPMFGM  180
EFDPLPPGAF GAPIGASTAV QQKQPGGPFE TKIYDRRDTK TVKGSVRAVC EYQFLLEQPT  240
VRTETYGRFP LSVNYGLPTD GPNARALSLA AGSSSLLGNE QVQPGYGFPG QIPNLNLLPQ  300
QSRPGHLLPT ASGEYDYVSR TNTSTNTALD ANIGSHPISA LGSPFVSSDR RVCLDDDVLR  360
KERKRKGEED RIAREIEAHE KRIRRELEKQ DMLKRKREEQ IRKEMRRHEH EKRKEEERLL  420
REKHREEERY QREQRRELER REKFLMKESI RAERLRQKEE LRKEKEAARL RAANERAIAR  480
KLAKESMEPV EDEYLELMEI ATSSQGLSLT LPLGFEALQN LDIFRDKLCE FPPKTVQLKR  540
PFSIQPWNGS EENVGNLLMV WRFLITFADV LGLWPFTLDE LVQAFHDYDP RLLGEIHVAL  600
LRSIIKDIED VARTPSTGAG ASQNSAANPG GGHPQIVEGA YAWGFDIRSW QRHLNVLTWP  660
EILRQFALSA GFGPQLKKRN IEQPYLCDGN EGNDGEDIIT NLRNGAAAEN AIAIMQERGF  720
SNPCRSRHRL TPGTVKFAAF HILSLEGSKG LTVLEVAEKI QKSGLRDLTT NKAQEASIAA  780
AFSRDTKLFD RTAPSTYCVR SPYRKDPADA EAILSAARER IQVFKSEFLS VDAEVAERDE  840
DSESDIAEDP VVDDLGAEIN AKKEIHNSEE RSSSVRETIS GKEESGVMET PQVEVGNACK  900
GLSSPHSGGF DKVKHIDAST EQSAGAASAG QEDMEIDESN PGELWVQGLM EGDYSDLSVE  960
ERLNALVALI SIVIEGNFIR IVLKERLEAA NALKKQIWTE AQLDKRRMKE DFVLRTYYSY  1020
VRNPVKNRLV MTSAECRESP QIIGDKKDHD SSVYHVVQQE CLNNSQNDQN CLNNMSTEGN  1080
LPVQDFSFGP DNLQYQQPGY ALDRSRSLLK SYIGHKAEEM YAYRSLPLGQ DRRRNRYWRF  1140
TTTSCNDPGC GRIFIELLDG RWRLIDTEEG FGALLSSLDV RGIRESLLHA MLLKIEMSFK  1200
EAVARNKLHV NERQKGDTAK QKANEMASGL DWSVYSESPS SILCGSDSDM PETSSFSIEL  1260
GRDENEKNNA LKRYQDFEKW MWKGCFSSLT FSVTKYGERM CKELLGVCDS CFNVYFVKDN  1320
HCPSCHTTYI ASKSALIFSE HVAQCAQKMQ MGAELALDGS VFSPMRIRLI KLQLALLEVS  1380
IPFEALQSTW TEDYRNSWGM KLDSSTTAEE LLQILTLLES SIRRDYLSSK FETTSEVLSP  1440
SNLSGHHVDY SFNLEAVPVL PWIPKTTAAV ALRLMEFNAA ISYTLTQGAE TKRDRGAEGF  1500
MELPPSKYAF VKNHQDDETM QTPNQVKYLQ KASWDDVGIG FSGSGRGEVR RRGLGVICGG  1560
RYQRRPANSR SGSRERIATA KSGRLRPVVE WKSRSHRQGG RNHGRRSSRR PKVANRMVES  1620
AGEGESRKEI MGKSSRSCGM NAWNGDEVAL LETGTADNGR SSESSGYKDE IRDECDYEAV  1680
DEYGGGFNGK DDDGEGSDYD IDGGEEAEIE ERNLNGGYIK ENSDEGVRDA ADDLPYGYST  1740
EGCSGFSE*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438189.1	0.0	PREDICTED: uncharacterized protein LOC105764222 isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A0D2T157	0.0	A0A0D2T157_GOSRA; Uncharacterized protein
STRING	Gorai.008G155100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9601	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Gorai.008G155100.1
Entrez Gene	105764222

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]