PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G158000.1
Common NameB456_008G158000, LOC105764260
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 250aa    MW: 28332.2 Da    PI: 6.6535
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G158000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.6e-081345134
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34
                        +g+WTteEd ll +++ ++G g W+  a++ g +
  Gorai.008G158000.1 13 KGPWTTEEDTLLTRYIGRHGVGPWNMLAKCAG-T 45
                        79*****************************9.4 PP
2Myb_DNA-binding49.69e-1691134146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Gorai.008G158000.1  91 RGNLTLQEQQLILQLHSLWGNR-WSKIAEHLP-GRTDNEIKNYWRT 134
                         7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.477885IPR017877Myb-like domain
SuperFamilySSF466891.45E-2511132IPR009057Homeodomain-like
SMARTSM007176.6E-91287IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-201492IPR009057Homeodomain-like
CDDcd001674.89E-71585No hitNo description
PROSITE profilePS5129424.80486140IPR017930Myb domain
SMARTSM007172.7E-1490138IPR001005SANT/Myb domain
PfamPF002499.9E-1591134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2393139IPR009057Homeodomain-like
CDDcd001671.89E-7111134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSTLIEEEIE VRKGPWTTEE DTLLTRYIGR HGVGPWNMLA KCAGTNTLIN NLFTLFFMFW  60
VDLPLTSSGL KRSGKSCRLR WLNYLNPDIK RGNLTLQEQQ LILQLHSLWG NRWSKIAEHL  120
PGRTDNEIKN YWRTRVQNKQ PSSSSLKEMS SQFSVPCQLP ECIVPSGSVI NISQQIEFPQ  180
HETSPNAYAH TCVDNNNLVL NGSYNIGRSG QDMEAFRLAS MSAVGEGCWI CNEMTDSLWQ  240
CRELGEMGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-23131397107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438235.10.0PREDICTED: myb-related protein 340-like isoform X1
RefseqXP_016735932.10.0PREDICTED: myb-related protein 340-like isoform X1
TrEMBLA0A0D2U3Y60.0A0A0D2U3Y6_GOSRA; Uncharacterized protein
TrEMBLA0A1U8NA100.0A0A1U8NA10_GOSHI; myb-related protein 340-like isoform X1
STRINGGorai.008G158000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2476734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.18e-46myb domain protein 21
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]