PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G158200.1

Common Name

B456_008G158200, LOC105762484

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 209aa MW: 22883.4 Da PI: 8.2168

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G158200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k F+++ L H++ H Gorai.008G158200.1 77 FECRYCFKEFTNSQALGGHQNAH 99 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.45E-7	72	104	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-5	72	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.468	77	104	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	79	99	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MAKDACSSAY HTCDSGNGYS QAGSCGGKKL KLFGFELSPS KNSGNFLKGC VEGDESINSS 60 SRAAGVDDGD STDEKKFECR YCFKEFTNSQ ALGGHQNAHK KERMKKKRLQ LQAKRAASIN 120 SYLQPLHDSC YPHHFTLYQE PPQISFDQYQ QEARLGASQI IHFQQDSSIF TITPADSTKP 180 SKHWCKSLDL QLGLSLQSTI HSSSGTGI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435722.1	1e-154	PREDICTED: zinc finger protein 5-like
TrEMBL	A0A0D2U3Z1	1e-153	A0A0D2U3Z1_GOSRA; Uncharacterized protein
STRING	Gorai.008G158200.1	1e-153	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7325	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	6e-17	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G158200.1
Entrez Gene	105762484

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]