PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G161000.1
Common NameB456_008G161000
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 367aa    MW: 39663.6 Da    PI: 7.585
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G161000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.14.5e-1859108255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +gr++AeIrdp++   + r +lg+f+taeeAa a++ a+++l+g
  Gorai.008G161000.1  59 KYRGVRRRP-WGRYAAEIRDPKS---KERRWLGTFDTAEEAACAYDCAARALRG 108
                         8********.**********843...4999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.4E-3359124IPR001471AP2/ERF domain
PROSITE profilePS5103222.32659116IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-2159116IPR016177DNA-binding domain
CDDcd000181.20E-3059115No hitNo description
Gene3DG3DSA:3.30.730.101.4E-2959115IPR001471AP2/ERF domain
PfamPF008476.9E-1159108IPR001471AP2/ERF domain
PRINTSPR003672.0E-96071IPR001471AP2/ERF domain
PRINTSPR003672.0E-98298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEEVVRRLNG IPHVPDPHPH PILNPIQCSA STTAVPTNTT TTSKKRFLKE NGGPGGTIKY  60
RGVRRRPWGR YAAEIRDPKS KERRWLGTFD TAEEAACAYD CAARALRGMK ARTNFVYPAT  120
DPHSPNGPFL PPFNFSNPSQ LSIGDLNRTR YQFGLSSNRP LFAKPPHSLV HHLPFINGTS  180
SSSLSSSFPT PSVLPATTFF NSSPSSSLWL SDNSTGPFTA STMTLPLKDK NSSVATVVPA  240
PAISTCQADD MGMGLFFPQG PSDSGLLEEI IQGFLPNPTS GNSGLVCSTT SNCTQHSIVS  300
PPTEMSFTGL NLKEIKNESL GFYMDYHPQL ESLNGIANSQ VVPNSNEIPL GHLQLGQDSM  360
PDDIFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-20591261476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435545.10.0PREDICTED: uncharacterized protein LOC105762196
TrEMBLA0A0D2PVU70.0A0A0D2PVU7_GOSRA; Uncharacterized protein
STRINGGorai.008G161000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73552541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.16e-25DORNROSCHEN-like
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]