PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G172400.1

Common Name

B456_008G172400, LOC105764416

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 133aa MW: 15141.4 Da PI: 6.6213

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G172400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.3	5.4e-11	77	118	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++ ++++E+ l+++ +++ G + W++Ia +++ gRt+++++ +w Gorai.008G172400.1 77 KLDFSEDEETLIIRMFNLVGER-WSLIAGRIP-GRTAEEIQKYW 118 5789****************.*****.********* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.306	72	122	IPR017877	Myb-like domain
SMART	SM00717	5.3E-8	76	124	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.36E-9	79	122	IPR009057	Homeodomain-like
Pfam	PF00249	8.4E-10	79	118	IPR001005	SANT/Myb domain
CDD	cd00167	1.03E-9	80	118	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.4E-13	80	120	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MQTPTVPTDK YRNSTTYQRP PLSTTTILPP LNQPCRLLLL LQFPRLKQQL LCLKLLFMAD 60 MDGSSVDSKE ESTGDSKLDF SEDEETLIIR MFNLVGERWS LIAGRIPGRT AEEIQKYWAS 120 RFSYNNPMPN PS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012438425.1	1e-93	PREDICTED: uncharacterized protein LOC105764416
TrEMBL	A0A0D2U1A2	3e-92	A0A0D2U1A2_GOSRA; Uncharacterized protein
STRING	Gorai.008G172400.1	5e-93	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM323	28	194

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01380.1	6e-17	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Gorai.008G172400.1
Entrez Gene	105764416

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]