PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G178100.1
Common NameB456_008G178100, LOC105764479
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 310aa    MW: 33402.9 Da    PI: 6.5087
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G178100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.36.7e-33167224259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp +v++tYeg+H h+
  Gorai.008G178100.1 167 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPAIVITTYEGQHCHH 224
                         8******************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-33151224IPR003657WRKY domain
SuperFamilySSF1182904.58E-28158224IPR003657WRKY domain
PROSITE profilePS5081129.585161226IPR003657WRKY domain
SMARTSM007743.1E-38166225IPR003657WRKY domain
PfamPF031068.7E-26167224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEDKEGGKPG TAFTSESSWT FSGGGPDSVS SSVNYFFDKD SSILSEFGWD LQPDHADDFG  60
RFAEIDRTDS ARPELVGNLS ASQSCAAADI VVRCSVSGTA SNPGGSADVS TSNPSVSSSS  120
SEDLPEKSTG SGGKPPEIPS KVRKKGQKQI RQPRFAFMTK SEVDHLEDGY RWRKYGQKAV  180
KNSPFPRSYY RCTNSKCTVK KRVERSSEDP AIVITTYEGQ HCHHGIAFPR GGLICHEAAF  240
AGQLTPPVSQ IYHPGVQSHR QMPPSITQLQ PHQAPVDVGE PHPEPEPTSQ LPTDEGLLGD  300
IVPPGMRGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-25156223774Probable WRKY transcription factor 4
2lex_A2e-25156223774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698440.0KF669844.1 Gossypium hirsutum WRKY transcription factor 67 (WRKY67) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438524.10.0PREDICTED: probable WRKY transcription factor 57
SwissprotQ9C9835e-73WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBLA0A0D2RH840.0A0A0D2RH84_GOSRA; Uncharacterized protein
STRINGGorai.008G178100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49952753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.28e-67WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Jiang Y,Qiu Y,Hu Y,Yu D
    Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa.
    Front Plant Sci, 2016. 7: p. 145
    [PMID:26904091]
  4. Jiang Y,Yu D
    The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance.
    Plant Physiol., 2016. 171(4): p. 2771-82
    [PMID:27268959]
  5. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]