PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G178900.1
Common NameB456_008G178900, LOC105764486
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 349aa    MW: 39107.6 Da    PI: 4.4833
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G178900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-194796255
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr+++ +grWvAeI+d      ++ r++lg+++taeeAa+a+++a+  l+g
  Gorai.008G178900.1 47 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTYDTAEEAARAYDEAAYLLRG 96
                        789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.25E-3146103No hitNo description
PROSITE profilePS5103219.99447104IPR001471AP2/ERF domain
PfamPF008475.1E-144796IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-1947104IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-2747103IPR001471AP2/ERF domain
SMARTSM003801.4E-3347110IPR001471AP2/ERF domain
PRINTSPR003679.9E-84859IPR001471AP2/ERF domain
PRINTSPR003679.9E-87086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGKRKVMATD VNDEEKGNNN VDEKAAMDAN VAAVAAALSG GRRARKRFVG VRQRPSGRWV  60
AEIKDTIQKI RVWLGTYDTA EEAARAYDEA AYLLRGANTR TNFWPFSPSS ISKPALPSKI  120
ANLLLLRLKA RNDAASASSN MPPNFPLNQL DTICFDDFFN VPEDCSTSSS DCMLESFGST  180
CADPKSLHLE DNNNVDGNPD YVGSKQDIDI MDFQFLDSFG SSCDYRSPFE IAEEMVEPME  240
KQQEDINGDD LDPCMLRETM KRMKYERKFS ASLYAFNGIP ECLRLKQRES ENNHNIQQQC  300
QPSNLRNSNS CENEMRLEFK EEDDQGIGSS SACEMWSLPD LPSITFIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-14471031471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438533.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A0D2T2D80.0A0A0D2T2D8_GOSRA; Uncharacterized protein
STRINGGorai.008G178900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1961567
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-15related to AP2 11
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]