PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G185500.4
Common NameB456_008G185500
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 242aa    MW: 27056 Da    PI: 5.9921
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G185500.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like34.73.9e-11213237125
             G2-like   1 kprlrWtpeLHerFveaveqLGGse 25 
                         k+r++W+peLH+rF++a++qLGGs+
  Gorai.008G185500.4 213 KQRRCWSPELHRRFLHALQQLGGSH 237
                         79*********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-8210236IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0055062Biological Processphosphate ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MIEMDYALKK RRCHEYVEAL EEERRKIQVF QRELPLCLEL VNQAIEAHKK EMSGGSTTTD  60
YMQGQSDCSE QTTSDVPVLE EFIPIKRSSN CSEEDDEQES HKSKETNVPA AVDKRKSDWL  120
RSVQLWNNNQ SPDLPLNEDD GKIGSAIEVK KNGGAFQPFQ KEKTVEMSGQ SAVGKTNGSA  180
TSTCTTESGS RGGEANNANK SKTEEKEGQA SRKQRRCWSP ELHRRFLHAL QQLGGSHGLC  240
Y*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00218DAPTransfer from AT1G68670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012438639.11e-177PREDICTED: transcription factor LUX-like
SwissprotQ9FPE83e-72HHO3_ARATH; Transcription factor HHO3
TrEMBLA0A0D2T2E91e-180A0A0D2T2E9_GOSRA; Uncharacterized protein
STRINGGorai.008G185500.11e-177(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-74G2-like family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]