PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.008G192000.1

Common Name

B456_008G192000, LOC105762505

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 88aa MW: 9678.9 Da PI: 5.6649

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.008G192000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18	5.3e-06	11	54	14	55
HHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskK..lsKaeiLekAveYIksLq 55 d++N + +L +llP++ ++++++ s iL++++ Y++ Lq Gorai.008G192000.1 11 DELNALILRLGTLLPQLNHGRHGRasSSTTKILKETCSYVRRLQ 54 679***********7777777745677889*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.28E-7	11	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-7	11	67	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MSGASNKITD DELNALILRL GTLLPQLNHG RHGRASSSTT KILKETCSYV RRLQKEVDDL 60 SERLSQCLDS MDISSSDAEF LTNLLQQ*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269\|PubMed:16527868}.

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269\|PubMed:16527868, ECO:0000269\|PubMed:20305124}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by exogenous gibberellin. {ECO:0000269\|PubMed:16527868}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012435732.1	5e-57	PREDICTED: transcription factor ILI3-like
Refseq	XP_016737698.1	5e-57	PREDICTED: transcription factor ILI3-like
Swissprot	F4JCN9	9e-20	PRE4_ARATH; Transcription factor PRE4
TrEMBL	A0A0D2T8R1	1e-55	A0A0D2T8R1_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8NI69	1e-55	A0A1U8NI69_GOSHI; transcription factor ILI3-like
TrEMBL	A0A2P5S1Z4	1e-55	A0A2P5S1Z4_GOSBA; Uncharacterized protein
STRING	Gorai.008G192000.1	2e-56	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18351	4	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47710.1	4e-22	BANQUO 3

Link Out ? help Back to Top
Phytozome	Gorai.008G192000.1
Entrez Gene	105762505

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]